View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10625_low_58 (Length: 241)
Name: NF10625_low_58
Description: NF10625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10625_low_58 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 28189456 - 28189692
Alignment:
| Q |
1 |
ctatgaaggataattcattcatcatgaaaaattgatgtaaatgtgttttgaaactacgttgaaaataacaaaattgaatttcatgtctctattttttatt |
100 |
Q |
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| T |
28189456 |
ctatgaaggataattcattcatcatgaaaaattgatgtaaatgtgttttgaaactatgttgaaaataacaaaattgaatttcatgtctctattttttatt |
28189555 |
T |
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| Q |
101 |
tcctttatttaagcattacttttgtcaaaaatggtttattcaacctttgtttgaagggtggtttattaaggcttattgctttgttttggttggttggtag |
200 |
Q |
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| T |
28189556 |
tcctttatttaagcattacttttgtcaaaaatggtttattcaacctttgtttgaagggtggtttattaaggcttattgctttgtt----ttggttggtag |
28189651 |
T |
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| Q |
201 |
tgatgttaaatcaagttatttaaaatgacatgacattgtat |
241 |
Q |
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| T |
28189652 |
tgatgttaaatcaagttatttaaaatgacatgaaattgtat |
28189692 |
T |
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Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 18476128 - 18476184
Alignment:
| Q |
172 |
cttattgctttgttttggttggttggtagtgatgttaaatcaagttatttaaaatga |
228 |
Q |
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| T |
18476128 |
cttattgctttgttttggttggttggtagtggtgttaaaccaaattatttaaaatga |
18476184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 241
Target Start/End: Complemental strand, 19540763 - 19540694
Alignment:
| Q |
172 |
cttattgctttgttttggttggttggtagtgatgttaaatcaagttatttaaaatgacatgacattgtat |
241 |
Q |
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| T |
19540763 |
cttattgctttgttttggttggttggtagtggtattaagccaaattatttaaaatgacgtggcattgtat |
19540694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 147
Target Start/End: Original strand, 18476007 - 18476130
Alignment:
| Q |
22 |
tcatgaaaaattgatgtaaatgtgttttgaaactacgttgaaaataacaaaattgaatttcatgtctctattttttatttcctttatttaagcattactt |
121 |
Q |
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| T |
18476007 |
tcatggaaatttgatgtaaatgtcttctgaaactatgttgaa--taataaaatagaattacatgtctctatttcttatttaatttattccaacattcctc |
18476104 |
T |
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| Q |
122 |
ttgtcaaaaatggtttattcaacctt |
147 |
Q |
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| T |
18476105 |
ttggaaaaattggtttaatcaacctt |
18476130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 24886818 - 24886888
Alignment:
| Q |
22 |
tcatgaaaaattgatgtaaatgtgttttgaaactacgttgaaaataacaaaattgaatttcatgtctctattt |
94 |
Q |
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| T |
24886818 |
tcatggaaatttgatgtaaatgtgttctaaaactttgttgaa--taataaaatcgaatttcatgtctctattt |
24886888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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