View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10625_low_66 (Length: 238)

Name: NF10625_low_66
Description: NF10625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10625_low_66
NF10625_low_66
[»] chr7 (13 HSPs)
chr7 (19-238)||(4815954-4816173)
chr7 (16-238)||(4783522-4783744)
chr7 (35-238)||(4637043-4637246)
chr7 (42-174)||(4643957-4644089)
chr7 (28-176)||(4711771-4711919)
chr7 (31-174)||(4696892-4697035)
chr7 (40-198)||(4631153-4631311)
chr7 (28-174)||(4864172-4864318)
chr7 (28-198)||(4845711-4845881)
chr7 (31-200)||(4672927-4673096)
chr7 (59-200)||(4653744-4653885)
chr7 (40-174)||(4667191-4667325)
chr7 (121-200)||(4663215-4663294)
[»] chr4 (1 HSPs)
chr4 (58-212)||(18925471-18925625)


Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 4815954 - 4816173
Alignment:
Q  19 ttacctggttttgacaacacggaataccaagttcttaacgacaaagctttagagacggtttatagagtcaacgttggtcaaaatcaagttccagcaaacc 118  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4815954 ttacctggttctgacaacacggaataccaagttcttaacaacaaagctttagagacggtttatagagtcaacgttggtcaaaatcaagttccagcaaacc 4816053  T
Q  119 aagatacaggcatgtttcgttattgggacaatgattatcctcgttacttggagaaagagtacccatctagtgtatcaagtgactttacacataacctaac 218  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4816054 aagatacaggcatgtttcgtaattgggacaatgattctcctcgttacttggagaaagagtacccatctagtgtatcaagtgactttacacataacctaac 4816153  T
Q  219 atataaaaacaatgtcattc 238  Q
    ||||||||||||||||||||    
T  4816154 atataaaaacaatgtcattc 4816173  T

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Target: chr7; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 4783522 - 4783744
Alignment:
Q  16 aatttacctggttttgacaacacggaataccaagttcttaacgacaaagctttagagacggtttatagagtcaacgttggtcaaaatcaagttccagcaa 115  Q
    |||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4783522 aatttacctggttttgacaacacggattatcaagttcttaactacaaagctttagagacggtttatagagtcaacgttggtcaaaatcaagttccagcaa 4783621  T
Q  116 accaagatacaggcatgtttcgttattgggacaatgattatcctcgttacttggagaaagagtacccatctagtgtatcaagtgactttacacataacct 215  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4783622 accaagatacaggcatgtttcgtaattgggacaatgattctcctcgttacttggagaaagagtacccatctagtgtatcaagtgactttacacataacct 4783721  T
Q  216 aacatataaaaacaatgtcattc 238  Q
    |||||||||||||||||||||||    
T  4783722 aacatataaaaacaatgtcattc 4783744  T

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Target: chr7; HSP #3
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 35 - 238
Target Start/End: Complemental strand, 4637246 - 4637043
Alignment:
Q  35 acacggaataccaagttcttaacgacaaagctttagagacggtttatagagtcaacgttggtcaaaatcaagttccagcaaaccaagatacaggcatgtt 134  Q
    |||||||||||| | ||| ||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||   | |||||||| |||||    
T  4637246 acacggaataccgaattcataaagacaaagctttggagatggtttatagagtcaacgttggtcaaaatcaagttccaccaagtgatgatacaggtatgtt 4637147  T
Q  135 tcgttattgggacaatgattatcctcgttacttggagaaagagtacccatctagtgtatcaagtgactttacacataacctaacatataaaaacaatgtc 234  Q
    |||  |||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4637146 tcgcaattggggcaatgattttcctctttacttggagaaagagtacccatctagtgtatcaagtgactttacacataacctaacatataaaaacaatgtc 4637047  T
Q  235 attc 238  Q
    ||||    
T  4637046 attc 4637043  T

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Target: chr7; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 42 - 174
Target Start/End: Complemental strand, 4644089 - 4643957
Alignment:
Q  42 ataccaagttcttaacgacaaagctttagagacggtttatagagtcaacgttggtcaaaatcaagttccagcaaaccaagatacaggcatgtttcgttat 141  Q
    ||||||| ||||||| ||||||||||| |||| ||||||||||||||||||||||| || |||||||||| |||||||||||||||| ||||||||| ||    
T  4644089 ataccaaattcttaatgacaaagctttggagatggtttatagagtcaacgttggtcgaattcaagttccaccaaaccaagatacaggtatgtttcgtaat 4643990  T
Q  142 tgggacaatgattatcctcgttacttggagaaa 174  Q
    |||||||||||||||||||||||||||||||||    
T  4643989 tgggacaatgattatcctcgttacttggagaaa 4643957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 28 - 176
Target Start/End: Original strand, 4711771 - 4711919
Alignment:
Q  28 tttgacaacacggaataccaagttcttaacgacaaagctttagagacggtttatagagtcaacgttggtcaaaatcaagttccagcaaaccaagatacag 127  Q
    ||||||||||||||||||||| ||| ||||||||||||||| || | ||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4711771 tttgacaacacggaataccaaattcataacgacaaagctttggaaatggtatatagagtcaacgttggtcaaaatcaagttccaccaaaccaagatacag 4711870  T
Q  128 gcatgtttcgttattgggacaatgattatcctcgttacttggagaaaga 176  Q
    | ||||||||| ||||||||| ||||| ||||| |||| |||| |||||    
T  4711871 gtatgtttcgtaattgggacagtgattttcctctttacctggaaaaaga 4711919  T

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Target: chr7; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 31 - 174
Target Start/End: Original strand, 4696892 - 4697035
Alignment:
Q  31 gacaacacggaataccaagttcttaacgacaaagctttagagacggtttatagagtcaacgttggtcaaaatcaagttccagcaaaccaagatacaggca 130  Q
    ||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||| || |||   |||||||||||| ||||||||||||| || |    
T  4696892 gacaacagggactaccaagttcttaacgacaaagcgttagagacggtttatagagtcaatgtgggtggcaatcaagttccaccaaaccaagatactggta 4696991  T
Q  131 tgtttcgttattgggacaatgattatcctcgttacttggagaaa 174  Q
    |||||||| | ||||||||||||| |||||||||||||||||||    
T  4696992 tgtttcgtaactgggacaatgattttcctcgttacttggagaaa 4697035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 40 - 198
Target Start/End: Complemental strand, 4631311 - 4631153
Alignment:
Q  40 gaataccaagttcttaacgacaaagctttagagacggtttatagagtcaacgttggtcaaaatcaagttccagcaaaccaagatacaggcatgtttcgtt 139  Q
    ||||||||  |||||||| |||||||| | || || |||||||||||||||| |||| |||||||||||||| ||||  | |||||||| ||||||||      
T  4631311 gaataccagattcttaacaacaaagctatggaaacagtttatagagtcaacgctggtgaaaatcaagttccaccaaattatgatacaggtatgtttcgca 4631212  T
Q  140 attgggacaatgattatcctcgttacttggagaaagagtacccatctagtgtatcaagt 198  Q
    ||||||||||||||| ||||||||||||||||||||| || |||  |||||||||||||    
T  4631211 attgggacaatgattttcctcgttacttggagaaagaatatccacttagtgtatcaagt 4631153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 28 - 174
Target Start/End: Complemental strand, 4864318 - 4864172
Alignment:
Q  28 tttgacaacacggaataccaagttcttaacgacaaagctttagagacggtttatagagtcaacgttggtcaaaatcaagttccagcaaaccaagatacag 127  Q
    |||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||| || ||| ||| |||||||||| |     | ||||| |    
T  4864318 tttgacaacacgaactaccaagttcttaacgacaaagcgttagagacggtttatagagtcaatgtcggtgaaagtcaagttccaccgggtgatgatactg 4864219  T
Q  128 gcatgtttcgttattgggacaatgattatcctcgttacttggagaaa 174  Q
    | ||||||||| ||||||||||||||| |||||||||||||||||||    
T  4864218 gtatgtttcgtaattgggacaatgattttcctcgttacttggagaaa 4864172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 28 - 198
Target Start/End: Original strand, 4845711 - 4845881
Alignment:
Q  28 tttgacaacacggaataccaagttcttaacgacaaagctttagagacggtttatagagtcaacgttggtcaaaatcaagttccagcaaaccaagatacag 127  Q
    ||||||||||  |||||| || ||| ||| || |||||||| |||| ||||||||||||||| |||||| |||||||||||| | |||   | |||||||    
T  4845711 tttgacaacagagaatacgaaattcgtaatgataaagctttggagatggtttatagagtcaatgttggtgaaaatcaagttcaaccaagtgatgatacag 4845810  T
Q  128 gcatgtttcgttattgggacaatgattatcctcgttacttggagaaagagtacccatctagtgtatcaagt 198  Q
    | ||||||||  ||||||||||||||| ||||||||||||||||||||| || |||  |||||||||||||    
T  4845811 gtatgtttcgcaattgggacaatgattttcctcgttacttggagaaagaatatccacttagtgtatcaagt 4845881  T

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Target: chr7; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 31 - 200
Target Start/End: Complemental strand, 4673096 - 4672927
Alignment:
Q  31 gacaacacggaataccaagttcttaacgacaaagctttagagacggtttatagagtcaacgttggtcaaaatcaagttccagcaaaccaagatacaggca 130  Q
    |||||||||||||||||| ||| |||||| |||||||| || | |||||||||||||||||||||| ||| |||||||||| |     | ||||| || |    
T  4673096 gacaacacggaataccaaattcataacgaaaaagctttggaaatggtttatagagtcaacgttggtgaaagtcaagttccaccgggtgacgatactggta 4672997  T
Q  131 tgtttcgttattgggacaatgattatcctcgttacttggagaaagagtacccatctagtgtatcaagtga 200  Q
    |||||||| ||||||||||||||| || | |||||||||||||| | || |||  |||||||||||||||    
T  4672996 tgtttcgtaattgggacaatgattttcatggttacttggagaaacaatatccacttagtgtatcaagtga 4672927  T

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Target: chr7; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 59 - 200
Target Start/End: Complemental strand, 4653885 - 4653744
Alignment:
Q  59 acaaagctttagagacggtttatagagtcaacgttggtcaaaatcaagttccagcaaaccaagatacaggcatgtttcgttattgggacaatgattatcc 158  Q
    |||||||| | ||||| |||||||| |||||||||||| |||||||||||||| |||||| |||||| ||  |||||||| ||||||| || ||||||||    
T  4653885 acaaagctctggagacagtttatagtgtcaacgttggtgaaaatcaagttccaccaaacctagatactggtttgtttcgtaattgggataacgattatcc 4653786  T
Q  159 tcgttacttggagaaagagtacccatctagtgtatcaagtga 200  Q
    ||||||||| |||||| | || |||   ||||||||||||||    
T  4653785 tcgttacttagagaaacaatatccactaagtgtatcaagtga 4653744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 40 - 174
Target Start/End: Complemental strand, 4667325 - 4667191
Alignment:
Q  40 gaataccaagttcttaacgacaaagctttagagacggtttatagagtcaacgttggtcaaaatcaagttccagcaaaccaagatacaggcatgtttcgtt 139  Q
    ||||||||  ||| |||| |||||||| | ||||||||||||||||||| ||||||| ||| |||||||||| |     | ||||| || |||||||||     
T  4667325 gaataccatattcctaacaacaaagctatggagacggtttatagagtcagcgttggtgaaagtcaagttccacctggtgacgatactggtatgtttcgta 4667226  T
Q  140 attgggacaatgattatcctcgttacttggagaaa 174  Q
    ||||||||||||||| |||||||||||||||||||    
T  4667225 attgggacaatgattttcctcgttacttggagaaa 4667191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 121 - 200
Target Start/End: Complemental strand, 4663294 - 4663215
Alignment:
Q  121 gatacaggcatgtttcgttattgggacaatgattatcctcgttacttggagaaagagtacccatctagtgtatcaagtga 200  Q
    |||||||| ||||||||||||||||| ||||||| ||||||||||||||||| ||| || |||   ||||||||||||||    
T  4663294 gatacaggtatgtttcgttattgggaaaatgattctcctcgttacttggagatagaatatccacaaagtgtatcaagtga 4663215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 58 - 212
Target Start/End: Original strand, 18925471 - 18925625
Alignment:
Q  58 gacaaagctttagagacggtttatagagtcaacgttggtcaaaatcaagttccagcaaaccaagatacaggcatgtttcgttattgggacaatgattatc 157  Q
    |||||||  |||||||||||||||||||||| ||||||| | ||||||||||||  ||   | || ||||| |||||||||||||||||||| |||| ||    
T  18925471 gacaaagtgttagagacggtttatagagtcagcgttggtgataatcaagttccacgaagtaatgacacaggtatgtttcgttattgggacaacgattttc 18925570  T
Q  158 ctcgttacttggagaaagagtacccatctagtgtatcaagtgactttacacataa 212  Q
    ||||||||||||||||| | || |||   |||||||||| ||| |||||||||||    
T  18925571 ctcgttacttggagaaacaatatccactaagtgtatcaaatgattttacacataa 18925625  T

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