View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10625_low_73 (Length: 231)
Name: NF10625_low_73
Description: NF10625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10625_low_73 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 26734950 - 26734754
Alignment:
| Q |
19 |
ggcaagtgaattggtcagtaacagggcaattcctccagcaaccttgtcaaatacacgggatttgtggacctaatagtgcttgcggttatgatccaagaac |
118 |
Q |
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| T |
26734950 |
ggcaagtgaattggtcagtaacagggcaattcctccagcaaccttgtcaaatacacgggatttgtggacctaatagtgcttgcggttatgatccaagaac |
26734851 |
T |
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| Q |
119 |
tggtagaaaatgttcatgtcttccaggttatagcataatcaacaaccaagactggtctcaaggatgcaaaccaagcttcgaattttcttgcaacaag |
215 |
Q |
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| T |
26734850 |
tggtagaaaatgttcatgtcttccaggttatagcataatcaacaaccaagactggtctcaaggatgcaaaccaagcttcgaattttcttgcaacaag |
26734754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 26699796 - 26699600
Alignment:
| Q |
19 |
ggcaagtgaattggtcagtaacagggcaattcctccagcaaccttgtcaaatacacgggatttgtggacctaatagtgcttgcggttatgatccaagaac |
118 |
Q |
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| T |
26699796 |
ggcaagagaattggtcagtaacagggcaattcctccagcaaccttgtcaaatacatgggatttgtggacctaatagcgcttgcagttatgatccaagaac |
26699697 |
T |
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| Q |
119 |
tggtagaaaatgttcatgtcttccaggttatagcataatcaacaaccaagactggtctcaaggatgcaaaccaagcttcgaattttcttgcaacaag |
215 |
Q |
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| T |
26699696 |
tggtagaaaatgttcgtgtcttccaggttatagcataatcaacaaccaggactggtctcaaggatgcaaaccaagcttcaaattttcttgcaacaag |
26699600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 26738181 - 26737989
Alignment:
| Q |
19 |
ggcaagtgaattggtcagtaacagggcaattcctccagcaaccttgtcaaatacacgggatttgtggacctaatagtgcttgcggttatgatccaagaac |
118 |
Q |
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| T |
26738181 |
ggcaagagaagtggttagtgtcagggcaattcgtccaacaaccttgtcaaattcatggaatttgtggacctaacagcacttgcagttatggtccaataaa |
26738082 |
T |
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| Q |
119 |
tggtagaaaatgttcatgtcttccaggttatagcataatcaacaaccaagactggtctcaaggatgcaaaccaagcttcgaattttcttgcaa |
211 |
Q |
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| T |
26738081 |
aggtagaaaatgttcgtgtcttccaggttatagcataatcaataaccaagattggtctcaagggtgcaaaccaagcttccaattttcttgcaa |
26737989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 26714945 - 26714753
Alignment:
| Q |
19 |
ggcaagtgaattggtcagtaacagggcaattcctccagcaaccttgtcaaatacacgggatttgtggacctaatagtgcttgcggttatgatccaagaac |
118 |
Q |
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| T |
26714945 |
ggcaagagaagtggttagtgtcagggcaattcgtccaacaaccatgtcaaattcatggaatttgtggacctaacagcacttgcagttatggtccaataaa |
26714846 |
T |
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| Q |
119 |
tggtagaaaatgttcatgtcttccaggttatagcataatcaacaaccaagactggtctcaaggatgcaaaccaagcttcgaattttcttgcaa |
211 |
Q |
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| T |
26714845 |
aggtagaaaatgttcgtgtcttctaggttatagcataatcaataaccaagattggtctcaagggtgcaaaccaagcttccaattttcatgcaa |
26714753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 40 - 211
Target Start/End: Complemental strand, 26676578 - 26676407
Alignment:
| Q |
40 |
cagggcaattcctccagcaaccttgtcaaatacacgggatttgtggacctaatagtgcttgcggttatgatccaagaactggtagaaaatgttcatgtct |
139 |
Q |
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| T |
26676578 |
cagggcaattccaccaacaacctttcaaaatacatggaatttgtggacctaatagtgtttgcattaataatccaagaactggtagaaagtgtttgtgtgt |
26676479 |
T |
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| Q |
140 |
tccaggttatagcataatcaacaaccaagactggtctcaaggatgcaaaccaagcttcgaattttcttgcaa |
211 |
Q |
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||| |||||||||| ||| | || ||| | |||||||| || |||||||||| |||| || |||| ||||| |
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| T |
26676478 |
tcccggttatagcaggatcgataatcaaaattggtctcaggggtgcaaaccaaacttccaactttcatgcaa |
26676407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 214
Target Start/End: Original strand, 26693759 - 26693838
Alignment:
| Q |
135 |
tgtcttccaggttatagcataatcaacaaccaagactggtctcaaggatgcaaaccaagcttcgaattttcttgcaacaa |
214 |
Q |
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| T |
26693759 |
tgtcttcctggttataacaggatcaataatcaagattggtctcaagggtgtaaaccaagcttccaactttcatgcaacaa |
26693838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 197
Target Start/End: Complemental strand, 26745116 - 26745038
Alignment:
| Q |
119 |
tggtagaaaatgttcatgtcttccaggttatagcataatcaacaaccaagactggtctcaaggatgcaaaccaagcttc |
197 |
Q |
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||||||||| ||||| || ||||||||||||| || ||| | || |||||||||| ||||| ||||||||||||||| |
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| T |
26745116 |
tggtagaaagtgttcgtgccttccaggttatatcaggatcgataatcaagactggttccaagggtgcaaaccaagcttc |
26745038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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