View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10625_low_75 (Length: 229)
Name: NF10625_low_75
Description: NF10625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10625_low_75 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 10 - 214
Target Start/End: Original strand, 28400361 - 28400565
Alignment:
| Q |
10 |
agaagcaaaggcaatgtaagaattgcaaggaaaattgttacaaccctcatcaagatctcatatgttaaaattgttaaaaaccaaaattaaatacaaccca |
109 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28400361 |
agaaacaatggcaatgtaagaattgcaaggaaaattgttacaaccctcatcaagatctcatatgttaaaattgttaaaaaccaaaattaaatacaaccca |
28400460 |
T |
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| Q |
110 |
atgagaatttataactaagagacacaactacagaagctagaatgcaacagtgagagaaaagattgaaactttatagcttacacagcaaaaacagccatga |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28400461 |
atgagaatttataactaagagacacaactacagaagctagaatgcaacagtgagagaaaagattgaaactttatagcttacacagcaaaaacagccatga |
28400560 |
T |
|
| Q |
210 |
attgt |
214 |
Q |
| |
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||||| |
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| T |
28400561 |
attgt |
28400565 |
T |
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