View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10625_low_82 (Length: 215)
Name: NF10625_low_82
Description: NF10625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10625_low_82 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 178; Significance: 3e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 52066604 - 52066423
Alignment:
| Q |
19 |
aagtatactatccaatatctgctggcacattacagagtattactattaagttatcacaacatgaacacaaactgttttatccaaacattgtgctcaaaac |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52066604 |
aagtatactatccaatatctgctggcacattacagagtattactattaagttatcacaacatgaacacaaactgttttatccaaacattgtgctcaaaac |
52066505 |
T |
|
| Q |
119 |
ctgcactcagtaccatataaattaaaaggccgtgtattctttcttctcattatattgaacataaattctcagccattctgtg |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52066504 |
ctgcactcagtgccatataaattaaaaggccgtgtattctttcttctcattatattgaacataaattctcagccattctgtg |
52066423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University