View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10625_low_85 (Length: 203)
Name: NF10625_low_85
Description: NF10625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10625_low_85 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 15 - 188
Target Start/End: Complemental strand, 27560589 - 27560416
Alignment:
| Q |
15 |
acgttggatgagatagggtctgaaaacatatttataattggtgggcagtcatcacttatcaccttacaagccggttttgtaaggcttgaattaaatttga |
114 |
Q |
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| T |
27560589 |
acgttggatgagatagggtctgaaaacatatttataattggtgggcagtcatcacttatcaccttacaagccggttttgtaaggcttgaattaaatttga |
27560490 |
T |
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| Q |
115 |
agagttacctactaaacttgaataccttttgttgatttagacctctttgaattgaatgacttcaaatatcatgt |
188 |
Q |
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| T |
27560489 |
agagttacctactaaacttgaataccttttgttgatttacacctctttgaattgaatgacttcaaatatcatgt |
27560416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 31 - 178
Target Start/End: Complemental strand, 36668095 - 36667950
Alignment:
| Q |
31 |
ggtctgaaaacatatttataattggtgggcagtcatcacttatcaccttacaagccggttttgtaaggcttgaattaaatttgaagagttacctactaaa |
130 |
Q |
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| T |
36668095 |
ggtctgaaaacatatttataattgttgggaagtcatcactcatcaccttacaggccggttttgtaagggttgagttaattttga--agttacctactaaa |
36667998 |
T |
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| Q |
131 |
cttgaataccttttgttgatttagacctctttgaattgaatgacttca |
178 |
Q |
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| T |
36667997 |
ctggaatactgtttgtcgatttacacctctttgaatttaatgacttca |
36667950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 34 - 103
Target Start/End: Complemental strand, 29410043 - 29409974
Alignment:
| Q |
34 |
ctgaaaacatatttataattggtgggcagtcatcacttatcaccttacaagccggttttgtaaggcttga |
103 |
Q |
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| T |
29410043 |
ctgaaaacatatttataatcggtgggcagtcatcactcaggacttcacaagccggttttgtaagggttga |
29409974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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