View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10626_high_1 (Length: 429)
Name: NF10626_high_1
Description: NF10626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10626_high_1 |
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| [»] chr1 (7 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 12 - 429
Target Start/End: Original strand, 23922353 - 23922776
Alignment:
| Q |
12 |
agcaaaggcagacgtattaacattcttttcacgagctaagctatcttcacaccttccaagtgcatcactagcatatctgatatccaagtctataaggtcc |
111 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
23922353 |
agcaatggcagacgtattaacattcttttcacgagctaagctatcttcacacctaccaagtgcatcactagcatatttgatatccaagtctatagtgtcc |
23922452 |
T |
|
| Q |
112 |
ggttcttcaatcaatgcaacttttaattgaccaaccacactattataatccttagcacattctttgattggttgagaagaaggatattttttcataattt |
211 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23922453 |
ggttcttcaatcaatgcaacttttaattgaccaaccacactattataatcatcaacacattctttgattggttgagaagaaggatattttttcataattt |
23922552 |
T |
|
| Q |
212 |
ctttaacttgttgttgggattttattgccttccctattgccgcaatctttaaaaatgacctgacaaaggtaagataatcttcgatcaaagtaattttagg |
311 |
Q |
| |
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|||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
23922553 |
ctttaacttgttgttgggattttactgccttctttattgccgcattctttaaaaatgacctgacaaaggtaagataatcttcaatcaaagtaattttggg |
23922652 |
T |
|
| Q |
312 |
gtaaacttctataagtttcaaacaacgttgttcaaagtctttttgaccaggtgctttgcatacattttggtacaacttggggct------tggtgttggt |
405 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
23922653 |
gtaagcttctataagtttcaaacaacgttgttcaaagtctttttgaccaggtgctttgcatacattttggtacaacttggggcttggtgctggtgttggt |
23922752 |
T |
|
| Q |
406 |
gttggtgaaatggcatgagaaaca |
429 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
23922753 |
gttggtgaaatggcatgagaaaca |
23922776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 12 - 406
Target Start/End: Original strand, 23914716 - 23915110
Alignment:
| Q |
12 |
agcaaaggcagacgtattaacattcttttcacgagctaagctatcttcacaccttccaagtgcatcactagcatatctgatatccaagtctataaggtcc |
111 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23914716 |
agcaatggcagacgtattaacattcttttcacgagctaagctatcttcacaccttccaagtgcatcactagcatatctgatatccaagtctataaggtcc |
23914815 |
T |
|
| Q |
112 |
ggttcttcaatcaatgcaacttttaattgaccaaccacactattataatccttagcacattctttgattggttgagaagaaggatattttttcataattt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
23914816 |
ggttcttcaatcaatgcaacttttaattgaccaaccacactattataatcattagcacattctttgatgggttgagaagaaggatattttttcataattt |
23914915 |
T |
|
| Q |
212 |
ctttaacttgttgttgggattttattgccttccctattgccgcaatctttaaaaatgacctgacaaaggtaagataatcttcgatcaaagtaattttagg |
311 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||| |
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| T |
23914916 |
ctttaacttgttgttgggattttattgccttccctattgccgcaatctttaaaaatgacctgcaaaaggtaagataatctttgatcaaagtaattggagg |
23915015 |
T |
|
| Q |
312 |
gtaaacttctataagtttcaaacaacgttgttcaaagtctttttgaccaggtgctttgcatacattttggtacaacttggggcttggtgttggtg |
406 |
Q |
| |
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|||| ||||||| ||||| | ||| |||||||| |||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
23915016 |
gtaaccttctattagtttgagacagcgttgttcgaagtctttctgaccaggttgtttgcatacattttggtacaacttgaggcttggtgttggtg |
23915110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 186 - 400
Target Start/End: Original strand, 25802949 - 25803163
Alignment:
| Q |
186 |
agaagaaggatattttttcataatttctttaacttgttgttgggattttattgccttccctattgccgcaatctttaaaaatgacctgacaaaggtaaga |
285 |
Q |
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||||||||||||||||| |||||||| | ||| ||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||| ||| |
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| T |
25802949 |
agaagaaggatatttttcagtaatttctctgactacttgttgggattttattgccttgtctattgccacaatctttaaaaatgacctgcaaaaggttaga |
25803048 |
T |
|
| Q |
286 |
taatcttcgatcaaagtaattttagggtaaacttctataagtttcaaacaacgttgttcaaagtctttttgaccaggtgctttgcatacattttggtaca |
385 |
Q |
| |
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||||||||||||||||| |||| ||||||| |||||| || |||| ||||||||||| ||||||||||| || ||| |||| ||||| |||||||||| |
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| T |
25803049 |
taatcttcgatcaaagtgatttgagggtaagattctattagcttcaggcaacgttgttcgaagtctttttggccgggttctttacatacgttttggtaca |
25803148 |
T |
|
| Q |
386 |
acttggggcttggtg |
400 |
Q |
| |
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|||| |||||||||| |
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| T |
25803149 |
acttagggcttggtg |
25803163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 166 - 267
Target Start/End: Original strand, 24436001 - 24436102
Alignment:
| Q |
166 |
gcacattctttgattggttgagaagaaggatattttttcataatttctttaacttgttgttgggattttattgccttccctattgccgcaatctttaaaa |
265 |
Q |
| |
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|||||| ||||||| | ||||||||||||||| |||||| | |||||||| ||||| ||||||| |||| |||| ||| |||||||| ||||| |||||| |
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|
| T |
24436001 |
gcacatcctttgatggtttgagaagaaggatactttttcttcatttctttgacttgatgttgggcttttgttgcattctctattgccacaatccttaaaa |
24436100 |
T |
|
| Q |
266 |
at |
267 |
Q |
| |
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|| |
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|
| T |
24436101 |
at |
24436102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 186 - 397
Target Start/End: Complemental strand, 23995448 - 23995237
Alignment:
| Q |
186 |
agaagaaggatattttttcataatttctttaacttgttgttgggattttattgccttccctattgccgcaatctttaaaaatgacctgacaaaggtaaga |
285 |
Q |
| |
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||||||||| ||||| ||| | |||||||| ||||| ||||| | |||| ||| ||| ||||||| ||||||||| | || | ||| ||| |||||| |
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|
| T |
23995448 |
agaagaagggtatttgttcttcatttctttgacttgatgttgagcttttcctgcattctttattgccacaatctttagatataatctggaaaatgtaaga |
23995349 |
T |
|
| Q |
286 |
taatcttcgatcaaagtaattttagggtaaacttctataagtttcaaacaacgttgttcaaagtctttttgaccaggtgctttgcatacattttggtaca |
385 |
Q |
| |
|
||||||||| || ||||||||| |||||| |||||| |||||| || ||||||||||| ||||| || | || | | || |||||| ||||||||| |
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| T |
23995348 |
taatcttcggtcgaagtaatttgagggtaggcttctaatgttttcaagcagcgttgttcaaaatctttgtggcgagattccttacatacactttggtaca |
23995249 |
T |
|
| Q |
386 |
acttggggcttg |
397 |
Q |
| |
|
|||| ||||||| |
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|
| T |
23995248 |
acttagggcttg |
23995237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 391 - 427
Target Start/End: Complemental strand, 5253072 - 5253036
Alignment:
| Q |
391 |
gggcttggtgttggtgttggtgaaatggcatgagaaa |
427 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |
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|
| T |
5253072 |
gggctaggtgttggtgttggtgaaatggcatgagaaa |
5253036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 427
Target Start/End: Complemental strand, 23989920 - 23989890
Alignment:
| Q |
397 |
ggtgttggtgttggtgaaatggcatgagaaa |
427 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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| T |
23989920 |
ggtgttggtgttggtgaaatggcatgagaaa |
23989890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 156; Significance: 1e-82; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 167 - 406
Target Start/End: Original strand, 35074584 - 35074823
Alignment:
| Q |
167 |
cacattctttgattggttgagaagaaggatattttttcataatttctttaacttgttgttgggattttattgccttccctattgccgcaatctttaaaaa |
266 |
Q |
| |
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||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||| |
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| T |
35074584 |
cacattctttgatgggttgagaagaaggatatttgttcataatctctttaacttgttgttgggattttactgccttctctattgccacaatctttaaaaa |
35074683 |
T |
|
| Q |
267 |
tgacctgacaaaggtaagataatcttcgatcaaagtaattttagggtaaacttctataagtttcaaacaacgttgttcaaagtctttttgaccaggtgct |
366 |
Q |
| |
|
||||||| ||| || ||||||||||||||||||||||||| ||||||| ||||||||||||| | ||||||||||||||||||||||||||||| | || |
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| T |
35074684 |
tgacctgcaaaaagttagataatcttcgatcaaagtaatttgagggtaagcttctataagtttgagacaacgttgttcaaagtctttttgaccagattct |
35074783 |
T |
|
| Q |
367 |
ttgcatacattttggtacaacttggggcttggtgttggtg |
406 |
Q |
| |
|
||||||| | || ||||||||| |||||||||||||||| |
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| T |
35074784 |
ttgcatatacgttcgtacaacttagggcttggtgttggtg |
35074823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 169 - 405
Target Start/End: Original strand, 35079555 - 35079791
Alignment:
| Q |
169 |
cattctttgattggttgagaagaaggatattttttcataatttctttaacttgttgttgggattttattgccttccctattgccgcaatctttaaaaatg |
268 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||||||||| ||| | ||||||||||||||||||||| ||||||| || |||||||||| | |
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|
| T |
35079555 |
cattctttgataggttgagaagaaggatattttttcacaatttctttgactcgatgttgggattttattgccttctttattgccacagtctttaaaaagg |
35079654 |
T |
|
| Q |
269 |
acctgacaaaggtaagataatcttcgatcaaagtaattttagggtaaacttctataagtttcaaacaacgttgttcaaagtctttttgaccaggtgcttt |
368 |
Q |
| |
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||||| |||||| |||||||||| |||||| ||||||||||||||| ||||||||||||| | |||||||||||| || ||||| |||| |||| |||| |
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| T |
35079655 |
acctgcaaaaggttagataatctttgatcaaggtaattttagggtaagcttctataagtttgagacaacgttgttcgaattctttctgacgaggttcttt |
35079754 |
T |
|
| Q |
369 |
gcatacattttggtacaacttggggcttggtgttggt |
405 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
35079755 |
acatacacttttgtacaacttggggcttggtgttggt |
35079791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 291
Target Start/End: Complemental strand, 13436084 - 13435966
Alignment:
| Q |
173 |
ctttgattggttgagaagaaggatattttttcataatttctttaacttgttgttgggattttattgccttccctattgccgcaatctttaaaaatgacct |
272 |
Q |
| |
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||||||| | ||||||||| |||||||||||| | |||||||| |||| |||||| |||| |||| || |||||||| ||||| |||||||| | || |
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| T |
13436084 |
ctttgatggcttgagaagagggatattttttcgtcatttctttgactttatgttggacttttgttgcattatctattgccacaatccttaaaaataatct |
13435985 |
T |
|
| Q |
273 |
gacaaaggtaagataatct |
291 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
13435984 |
tgaaaaggtaagataatct |
13435966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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