View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10626_low_4 (Length: 246)
Name: NF10626_low_4
Description: NF10626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10626_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 40842271 - 40842487
Alignment:
| Q |
18 |
gatttgaggggagagaggagaacttacatgcttaatgcttttcaaattcaatttacggtgacttattcttctatgactcaagctgatgcaggttttgttt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
40842271 |
gatttgaggggagagaggagaacttacatgcttaatgcttttcaaattcaatttacggtgacttattcttctatgactctagctgatgcagtttttgttt |
40842370 |
T |
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| Q |
118 |
gtgattaccaaaaataagggaagttatgttgatagtggattgaatactaatgttgctattatttctctcaagtgcagccactaagccaaataattaggag |
217 |
Q |
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| T |
40842371 |
ctaattacaaaaaataagggaagttatgttgatagtggattgaatactaatgttgctattatttatctcaagtgcagccactaagccaaataattaggag |
40842470 |
T |
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| Q |
218 |
atatattgtgcaaccta |
234 |
Q |
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|||||||||||||||| |
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| T |
40842471 |
gtatattgtgcaaccta |
40842487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 41959087 - 41959306
Alignment:
| Q |
18 |
gatttgaggggagagaggagaacttacatgcttaatgcttttcaaattcaatttacggtgacttattcttctatgactcaagctgatgcaggtttt--gt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||| || |
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| T |
41959087 |
gatttgaggggagagaggagaacttacatgcttaatgcttttcaaattcaatttacggtgacttattcttctataactctagctgatgcagtttttttgt |
41959186 |
T |
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| Q |
116 |
ttgtgattaccaaaaataagggaagttatgttgatagtggattgaatactaatgttgctattatttctctcaagtgcagccactaagccaaataattagg |
215 |
Q |
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| T |
41959187 |
ttctaattaccaaaaataagggaagttatgttgatagtggattgaatactaatgttgctattatttatctcaagttcagccactaagccaaataattagg |
41959286 |
T |
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| Q |
216 |
agatatattgtgcaacctat |
235 |
Q |
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| ||||||||||||||||| |
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| T |
41959287 |
gggtatattgtgcaacctat |
41959306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 42078211 - 42078264
Alignment:
| Q |
164 |
ctaatgttgctattatttctctcaagtgcagccactaagccaaataattaggag |
217 |
Q |
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|||||||||| |||||||||| ||||| |||| ||||||||||||||||||||| |
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| T |
42078211 |
ctaatgttgccattatttctcacaagtacagctactaagccaaataattaggag |
42078264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 29587060 - 29586841
Alignment:
| Q |
18 |
gatttgaggggagagaggagaacttacatgcttaatgcttttcaaattcaatttacggtgacttattcttctatgactcaagctgatgcaggttttgttt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||| ||||||||||| |||||||| |
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| T |
29587060 |
gatttgaggggagagaggagaacttacatgcttaatgcttttccaattcaatttacgacggcttattcttctatgactctagctgatgcagtttttgttt |
29586961 |
T |
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| Q |
118 |
gtgattaccaaaaataagggaagttatgttgatagtggattgaatactaatgttgctatta-tttctctcaagtgcagccactaagccaaataattagga |
216 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
29586960 |
ctaattaccaaaaataagggaagttatgttgatagtggattgaatactaatgttgctattattttctctcaagtgcagccactaagccaaataattagga |
29586861 |
T |
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| Q |
217 |
gatatattgtgcaacctatg |
236 |
Q |
| |
|
|||||||||||||||||| |
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| T |
29586860 |
agtatattgtgcaacctatg |
29586841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 106 - 236
Target Start/End: Complemental strand, 9992602 - 9992472
Alignment:
| Q |
106 |
caggttttgtttgtgattaccaaaaataagggaagttatgttgatagtggattgaatactaatgttgctattatttctctcaagtgcagccactaagcca |
205 |
Q |
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|||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9992602 |
caggttttgtttctaattaccaaaaataagggaacttatgttgatagtggattgaatactaatgttgctattatttctctcaagtgcagccactaagcca |
9992503 |
T |
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| Q |
206 |
aataattaggagatatattgtgcaacctatg |
236 |
Q |
| |
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|||||||||||| |||||||||||||||||| |
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| T |
9992502 |
aataattaggaggtatattgtgcaacctatg |
9992472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 9992837 - 9992738
Alignment:
| Q |
18 |
gatttgaggggagagaggagaacttacatgcttaatgcttttcaaattcaatttacggtga----cttattcttctatgactcaagctgatgcaggtttt |
113 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||| ||||||| |
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| T |
9992837 |
gatttgagaggagagaggagaacttacatgcttaatgcttttcaaattcaatttacggtgacttacttattcttctatgactctagttgatgtaggtttt |
9992738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 41943780 - 41943834
Alignment:
| Q |
164 |
ctaatgttgctattatttctctcaa-gtgcagccactaagccaaataattaggag |
217 |
Q |
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|||||||||| |||||||||| ||| || |||||||||||||||||||||||||| |
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| T |
41943780 |
ctaatgttgccattatttctcacaatgtacagccactaagccaaataattaggag |
41943834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 10345414 - 10345466
Alignment:
| Q |
164 |
ctaatgttgctattatttctctcaagtgcagccactaagccaaataattaggag |
217 |
Q |
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|||||||||| |||||||||| ||||| ||||||||||||| |||||||||||| |
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| T |
10345414 |
ctaatgttgccattatttctcacaagtacagccactaagcc-aataattaggag |
10345466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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