View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10626_low_5 (Length: 245)
Name: NF10626_low_5
Description: NF10626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10626_low_5 |
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| [»] scaffold0535 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 5 - 232
Target Start/End: Complemental strand, 45716613 - 45716386
Alignment:
| Q |
5 |
ttgccggtccgcgcatctcccatgctactaccaacaacagcgcctcagccacctggtcctatatcatcaaagctaaagatatcattaaagatggtttctc |
104 |
Q |
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||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
45716613 |
ttgccggtccgcgcatcctccatgctactacccacaacagcgcctcagccacctggtcctctatcatcaaagctaaagatatcattaaagatggtttctc |
45716514 |
T |
|
| Q |
105 |
ttggcgcgctggacccggtagttcttccttttggtcttgcccttggagctcctttggttacttagggcctcttgtaccctatattgacattcatgacatt |
204 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
45716513 |
ttggcgcgtatgatccggtagttcttccttttggtcttgcccttggagctcctttggttacttagggcctcttgcaccctatattgacattcatgacatt |
45716414 |
T |
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| Q |
205 |
cagttaacggttaaagacgtcatctcct |
232 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
45716413 |
tagttaacggttaaagacgtcatctcct |
45716386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 14292594 - 14292825
Alignment:
| Q |
1 |
tatgttgccggtccgcgcatctcccatgctactaccaacaacagcgcctcagccacctggtcctatatcatcaaagctaaagatatcattaaagatggtt |
100 |
Q |
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|||||| |||||||||||||| || |||||||||| |||| || ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
14292594 |
tatgtttccggtccgcgcatcctccttgctactacccacaatagtgcctcagccacctggtcctctatcatcaaagctaaagatattattaaagatggtt |
14292693 |
T |
|
| Q |
101 |
tctcttggcgcgctggacccggtagttcttccttttggtcttgcccttggagctcctttggttacttagggcctcttgtaccctatattgacattcatga |
200 |
Q |
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||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14292694 |
tcttttggcgcgcaggatccggtagttcttccttttggtcttgcccttggagctcctttggttacttagggcctcttgtaccctatattgacattcatga |
14292793 |
T |
|
| Q |
201 |
cattcagttaacggttaaagacgtcatctcct |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
14292794 |
cattcagttaacggttaaagacgtcatctcct |
14292825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 14308643 - 14308874
Alignment:
| Q |
1 |
tatgttgccggtccgcgcatctcccatgctactaccaacaacagcgcctcagccacctggtcctatatcatcaaagctaaagatatcattaaagatggtt |
100 |
Q |
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|||||| |||||||||||||| || |||||||||| |||| || ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
14308643 |
tatgtttccggtccgcgcatcctccttgctactacccacaatagtgcctcagccacctggtcctctatcatcaaagctaaagatattattaaagatggtt |
14308742 |
T |
|
| Q |
101 |
tctcttggcgcgctggacccggtagttcttccttttggtcttgcccttggagctcctttggttacttagggcctcttgtaccctatattgacattcatga |
200 |
Q |
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||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
14308743 |
tcttttggcgcgcaggatccggtagttcttccttttggtcttgcccttggagctcctttggttacttagggccttttgtaccctatattgacattcatga |
14308842 |
T |
|
| Q |
201 |
cattcagttaacggttaaagacgtcatctcct |
232 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
14308843 |
cattcagttaacggttaaagacgtcatctcct |
14308874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 68 - 194
Target Start/End: Original strand, 9788957 - 9789083
Alignment:
| Q |
68 |
tcatcaaagctaaagatatcattaaagatggtttctcttggcgcgctggacccggtagttcttccttttggtcttgcccttggagctcctttggttactt |
167 |
Q |
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|||||||| | ||| ||||||||||||||| | |||||||||| | |||| | ||||||||||| |||||||| || |||||||| || ||| ||||||| |
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| T |
9788957 |
tcatcaaaacaaaaaatatcattaaagatgatctctcttggcgtgttggatcaggtagttcttctttttggtcatgtccttggagttcttttagttactt |
9789056 |
T |
|
| Q |
168 |
agggcctcttgtaccctatattgacat |
194 |
Q |
| |
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|||| | ||||| |||||||||||||| |
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| T |
9789057 |
agggtcccttgtgccctatattgacat |
9789083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 200
Target Start/End: Complemental strand, 24132442 - 24132333
Alignment:
| Q |
91 |
aaagatggtttctcttggcgcgctggacccggtagttcttccttttggtcttgcccttggagctcctttggttacttagggcctcttgtaccctatattg |
190 |
Q |
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|||||||||||| |||||||| | || | |||| |||||||||||||| ||| |||||||||||| |||| | |||||| | |||| ||||| || | |
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| T |
24132442 |
aaagatggtttcacttggcgctcgggttctggtaattcttccttttggttttgtccttggagctcccttggcttcttaggctccattgtcccctacatag |
24132343 |
T |
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| Q |
191 |
acattcatga |
200 |
Q |
| |
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|||||||||| |
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| T |
24132342 |
acattcatga |
24132333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0535 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0535
Description:
Target: scaffold0535; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 91 - 170
Target Start/End: Original strand, 2721 - 2800
Alignment:
| Q |
91 |
aaagatggtttctcttggcgcgctggacccggtagttcttccttttggtcttgcccttggagctcctttggttacttagg |
170 |
Q |
| |
|
|||||||||||| |||||||||| ||| | ||||||||||||||||||| ||| |||||||||||| ||| || |||||| |
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| T |
2721 |
aaagatggtttcacttggcgcgcaggatctggtagttcttccttttggttttgtccttggagctcccttgatttcttagg |
2800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 91 - 218
Target Start/End: Complemental strand, 27849363 - 27849236
Alignment:
| Q |
91 |
aaagatggtttctcttggcgcgctggacccggtagttcttccttttggtcttgcccttggagctcctttggttacttagggcctcttgtaccctatattg |
190 |
Q |
| |
|
||||||||||||||||||||||| ||| | |||| |||||||||||||| ||| |||||||||||| ||| | |||||| || |||| ||||| || | |
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| T |
27849363 |
aaagatggtttctcttggcgcgcgggatcaggtaattcttccttttggttttgtccttggagctcccttgaattcttaggatctattgttccctacatag |
27849264 |
T |
|
| Q |
191 |
acattcatgacattcagttaacggttaa |
218 |
Q |
| |
|
|||| |||||| | ||||| || ||||| |
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| T |
27849263 |
acatacatgacttgcagttgacagttaa |
27849236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 11847444 - 11847593
Alignment:
| Q |
24 |
ccatgctactaccaacaacagcgcctcagccacctggtcctatatcatcaaagctaaagatatcattaaagatggtttctcttggcgcgctggacccggt |
123 |
Q |
| |
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|||||| |||||| |||||| |||||| ||| ||||| | |||||||| | ||| | ||||| |||||||||||||||||| |||| |||| ||| |
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| T |
11847444 |
ccatgccactacctacaacaatgcctcattcacttggtcttccatcatcaactcaaaaaacatcataaaagatggtttctcttggtgcgcaggactaggt |
11847543 |
T |
|
| Q |
124 |
agttcttccttttggtcttgcccttggagctcctttggttacttagggcc |
173 |
Q |
| |
|
|||| ||| |||||||||| ||| | ||| ||||||||| |||||||||| |
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| T |
11847544 |
agttattctttttggtctttcccctagagttcctttggtaacttagggcc |
11847593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 200
Target Start/End: Complemental strand, 50752968 - 50752811
Alignment:
| Q |
43 |
agcgcctcagccacctggtcctatatcatcaaagctaaagatatcattaaagatggtttctcttggcgcgctggacccggtagttcttccttttggtctt |
142 |
Q |
| |
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||||||||| |||| ||||| | ||||| |||| ||| | ||||| ||||||||||||||||||||||| || | ||||||||| |||||||||| |
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| T |
50752968 |
agcgcctcaaccacttggtcttccatcataaaagtaaaaaacatcataaaagatggtttctcttggcgcgcgtgatcaaatagttcttctttttggtctt |
50752869 |
T |
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| Q |
143 |
gcccttggagctcctttggttacttagggcctcttgtaccctatattgacattcatga |
200 |
Q |
| |
|
|| |||| || |||||||| |||||| | | | ||||| ||||||||| ||||| |
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|
| T |
50752868 |
atccctggaattcatttggttatttagggtccttggcaccctttattgacatccatga |
50752811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 31033254 - 31033302
Alignment:
| Q |
121 |
ggtagttcttccttttggtcttgcccttggagctcctttggttacttag |
169 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||||| ||||| |
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| T |
31033254 |
ggtagttcttccttttggttttgtccttggagctcctttggtttcttag |
31033302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 200
Target Start/End: Original strand, 24873141 - 24873208
Alignment:
| Q |
133 |
ttttggtcttgcccttggagctcctttggttacttagggcctcttgtaccctatattgacattcatga |
200 |
Q |
| |
|
|||||||||||||||||||| || |||||| | ||||| | |||| |||||| |||||||||||||| |
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| T |
24873141 |
ttttggtcttgcccttggagttctcttggtttcatagggtcccttgcaccctacattgacattcatga |
24873208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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