View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10626_low_7 (Length: 215)
Name: NF10626_low_7
Description: NF10626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10626_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 1e-95; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 12 - 200
Target Start/End: Original strand, 1717419 - 1717607
Alignment:
| Q |
12 |
gagagaagaactttagaatctgtggccaatggatttgacatgatcacataagtatttgggatgtatttcctcacaacatcataagcttccctgtaatagt |
111 |
Q |
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| T |
1717419 |
gagagaagaagtttagaatctgtggccaatggatttgacatgatcacataagtatttgggatgtatttcctcacaacatcataagcttccctgtaatagt |
1717518 |
T |
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| Q |
112 |
tcttcaggctatctagattgacacctagtggcttattcatcagctctattcctcctaaactttttctatgactgtatctgtaaacaagt |
200 |
Q |
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| T |
1717519 |
tcttcaagctatctagattgacacctagtggctcattcatcagctctattcctcctaaactttttctatgactgtatctgtaaacaagt |
1717607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 12 - 200
Target Start/End: Original strand, 1738916 - 1739104
Alignment:
| Q |
12 |
gagagaagaactttagaatctgtggccaatggatttgacatgatcacataagtatttgggatgtatttcctcacaacatcataagcttccctgtaatagt |
111 |
Q |
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| T |
1738916 |
gagagaagaagtttggaatctgtggccaatgggtttgacatgatcacataagtatttgggatgtatttcctcacaacatcataagctaacttgtaatagt |
1739015 |
T |
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| Q |
112 |
tcttcaggctatctagattgacacctagtggcttattcatcagctctattcctcctaaactttttctatgactgtatctgtaaacaagt |
200 |
Q |
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| T |
1739016 |
tcttgaggctatcttgattgacaccaagtggctcattcatcagctctattcctcctaaactttttctattattatatctgtaaacaagt |
1739104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 12 - 173
Target Start/End: Original strand, 1754087 - 1754248
Alignment:
| Q |
12 |
gagagaagaactttagaatctgtggccaatggatttgacatgatcacataagtatttgggatgtatttcctcacaacatcataagcttccctgtaatagt |
111 |
Q |
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| T |
1754087 |
gagagaagtactttagaatctgcatccaatgggtttgacattatcacataagcatttggattgtatttcctcactgcatcataagcctccttgtaatatt |
1754186 |
T |
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| Q |
112 |
tcttcaggctatctagattgacacctagtggcttattcatcagctctattcctcctaaactt |
173 |
Q |
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|||| ||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||| |
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| T |
1754187 |
tcttgaggctatctagattgacaccttgtggctcattcatcaactctattcctcctaaactt |
1754248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 12 - 173
Target Start/End: Original strand, 1748771 - 1748932
Alignment:
| Q |
12 |
gagagaagaactttagaatctgtggccaatggatttgacatgatcacataagtatttgggatgtatttcctcacaacatcataagcttccctgtaatagt |
111 |
Q |
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||||||||| ||||||||||| ||||||||||||||||||||||||||| | |||| ||||||| |||||| ||||||||||| || ||||||| | |
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| T |
1748771 |
gagagaagagctttagaatctccatccaatggatttgacatgatcacataagcctctgggttgtattttctcacagcatcataagctgccttgtaatact |
1748870 |
T |
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| Q |
112 |
tcttcaggctatctagattgacacctagtggcttattcatcagctctattcctcctaaactt |
173 |
Q |
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|||| || ||||| |||||||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
1748871 |
tcttgagactatcaagattgacaccttgtggctcattcatcagctctattcctcctaaactt |
1748932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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