View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10627_high_5 (Length: 251)
Name: NF10627_high_5
Description: NF10627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10627_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 8738765 - 8739005
Alignment:
| Q |
1 |
ccggaatggtttttcttgtgtccttgtgattataagtacgcaaagagtaaaaagtttaaccgagcaacggagttagggttttggaaagctactggaattg |
100 |
Q |
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| T |
8738765 |
ccggaatggtttttcttgtgtccttgtgattacaagtacgcaaagagtaaaaagtttaaccgagcaacggagttagggttttggaaagctactggaattg |
8738864 |
T |
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| Q |
101 |
aacatgatattaaaattcatggtaccgacaaagttatagcaactaagaagattcttgttttctatttgaaagctaccggaaataaatgccctgttaggac |
200 |
Q |
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| T |
8738865 |
aacatgatattaaaattcatggtaccgacaaagttatagcaactaagaagattcttgttttctatttgaaagctaccggaaataaatgccatgttaggac |
8738964 |
T |
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| Q |
201 |
caattgggttatacatgagtatcatgatgctgtcacctttg |
241 |
Q |
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| T |
8738965 |
caactgggttatacatgagtatcatgatgctgtcacctttg |
8739005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 14372488 - 14372433
Alignment:
| Q |
4 |
gaatggtttttcttgtgtccttgtgattataagtacgcaaagagtaaaaagtttaa |
59 |
Q |
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| T |
14372488 |
gaatggtttttcttgtgtcctattgattacaagtatgcaaagagtaaaaggtttaa |
14372433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 8705239 - 8705294
Alignment:
| Q |
4 |
gaatggtttttcttgtgtccttgtgattataagtacgcaaagagtaaaaagtttaa |
59 |
Q |
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| T |
8705239 |
gaatggttttttttgtgtcctattgattataagtatgccaagagtaaaaggtttaa |
8705294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 97
Target Start/End: Original strand, 8722314 - 8722409
Alignment:
| Q |
2 |
cggaatggtttttcttgtgtccttgtgattataagtacgcaaagagtaaaaagtttaaccgagcaacggagttagggttttggaaagctactggaa |
97 |
Q |
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| T |
8722314 |
cggaatggtttttcttgtgtcctcgcaattacaagtatcaaaggtgtaataagtttaagagaggaacagagtttggattttggaaagctactggaa |
8722409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 8740315 - 8740370
Alignment:
| Q |
4 |
gaatggtttttcttgtgtccttgtgattataagtacgcaaagagtaaaaagtttaa |
59 |
Q |
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| T |
8740315 |
gaatggtttttcttgtgtcctattgaatacaagtatgcaaagagtaaaaggtttaa |
8740370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 8690959 - 8691015
Alignment:
| Q |
4 |
gaatggtttttcttgtgtccttgtgattataagtacgcaaagagtaaaaagtttaac |
60 |
Q |
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| T |
8690959 |
gaatggtttttcttttgtcctcgcgattacaaatacgcaaatagtaaaaggtttaac |
8691015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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