View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10627_low_10 (Length: 237)
Name: NF10627_low_10
Description: NF10627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10627_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 8738633 - 8738483
Alignment:
| Q |
1 |
caaggctcaaacctgcaaacatcaacttctgctatgacattgttaacatcggaaacattaccaagtaacttgttcttgaggtagtgattaactagttctt |
100 |
Q |
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| T |
8738633 |
caaggctcaaacctgcaaacatcaacttctgctatgacattgttaacatgggaaacattaccaagtaacttgttcttgaggtagtgattaactagttctt |
8738534 |
T |
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| Q |
101 |
catttgttggtcggaatctgaatccgacaggaagaaaatcaagaatgagag |
151 |
Q |
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| T |
8738533 |
catttgttggtcggaatctgaatccgacaggaagaaaatcaagaatgagag |
8738483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 8690852 - 8690720
Alignment:
| Q |
1 |
caaggctcaaacctgcaaacatcaacttctgctatgacattgttaacatcggaaacattaccaagtaacttgttcttgaggtagtgattaactagttctt |
100 |
Q |
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| T |
8690852 |
caaggttcgaacttgcatacatcaacttcagctataacattgttgacaatggaatcattaccaagtaacttttttttgagatagtggtttacaagctctt |
8690753 |
T |
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| Q |
101 |
catttgttggtcggaatctgaatccgacaggaa |
133 |
Q |
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| T |
8690752 |
catctgttggtcggaatctgaatccaacaggaa |
8690720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 14 - 133
Target Start/End: Complemental strand, 8705111 - 8704992
Alignment:
| Q |
14 |
tgcaaacatcaacttctgctatgacattgttaacatcggaaacattaccaagtaacttgttcttgaggtagtgattaactagttcttcatttgttggtcg |
113 |
Q |
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| T |
8705111 |
tgcatacatcaacttcagctataacattgtttacaatggaatcattaccaagtaacttttttttgagatagtggtttacaagctcttcatctgttggtcg |
8705012 |
T |
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| Q |
114 |
gaatctgaatccgacaggaa |
133 |
Q |
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| T |
8705011 |
gaatctgaatccaacaggaa |
8704992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 175 - 226
Target Start/End: Complemental strand, 8738453 - 8738402
Alignment:
| Q |
175 |
tgaatatgttggtaggtttgcatcaatttataatgctacaagaaggaagtga |
226 |
Q |
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| T |
8738453 |
tgaatatgttggtaggtttgcatcaatttataatgctacaagaaggtagtga |
8738402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 8722183 - 8722051
Alignment:
| Q |
19 |
acatcaacttctgctatgacattgttaacatcggaaacattaccaagtaacttgttcttgaggtagtgattaactagttcttcatttgttggtcggaatc |
118 |
Q |
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| T |
8722183 |
acatcaacttcagctatgacattgttaacaaactcttcattgccaagtaacttgtttctgagatagtagtttacaagctcttgatctgttggatggaatc |
8722084 |
T |
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| Q |
119 |
tgaatccgacaggaagaaaatcaagaatgagag |
151 |
Q |
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| T |
8722083 |
tgaatccaacaggaagacaatcatgaatgagag |
8722051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 125
Target Start/End: Complemental strand, 8723526 - 8723422
Alignment:
| Q |
21 |
atcaacttctgctatgacattgttaacatcggaaacattaccaagtaacttgttcttgaggtagtgattaactagttcttcatttgttggtcggaatctg |
120 |
Q |
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||||||||| ||||| |||||||| ||| || |||||||||| ||||| || | ||||||||||||||||| |||||| |||||| | |||||| |
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| T |
8723526 |
atcaacttcagctataacattgtttacaatggcgtcattaccaagcaacttatttctaaggtagtgattaactagctcttcacctgttggacaaaatctg |
8723427 |
T |
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| Q |
121 |
aatcc |
125 |
Q |
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||||| |
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| T |
8723426 |
aatcc |
8723422 |
T |
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