View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10627_low_12 (Length: 216)
Name: NF10627_low_12
Description: NF10627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10627_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 35800101 - 35799903
Alignment:
| Q |
1 |
actatgtttctgtttgtgttggatattctgctgattatgttctgtaataatttttgtctgtgttgtgctttgaattcatgcgggctatggtttgctattt |
100 |
Q |
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| T |
35800101 |
actatgtttctgtttgtgttggatattctgctgattatgttctgtaataatttttgtctgtgttgtgctttgaattcatgcggtctacggtttgctattt |
35800002 |
T |
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| Q |
101 |
cgaattgaatatctagaaatcatctcttggtgaaacgttgttaagaaaaccctatgccattaaattgcttattcttgtatgcagctaaattgtgtatct |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35800001 |
cgaattgaatatctagaaatcatctcttggtgaaacgttgttaagaaaaccctatgccattaaattgcttattcttgtatgcagctaaattgtgtatct |
35799903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 35786847 - 35786726
Alignment:
| Q |
1 |
actatgtttctgtttgtgttggatattctgctgattatgttctgtaataatttttgtctgtgttgtgctttgaattcatgcgggcta-tggtttgctatt |
99 |
Q |
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|||||||||||||||||||||||| |||||| ||||||||||||||| | ||||||||||| |||||||||| | |||| | ||| || | ||||||| |
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| T |
35786847 |
actatgtttctgtttgtgttggatcttctgccaattatgttctgtaatcacttttgtctgtgctgtgctttgattacatgtcgtctattgatatgctatt |
35786748 |
T |
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| Q |
100 |
tcgaattgaatatctagaaatc |
121 |
Q |
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|| |||||||||||||| |||| |
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| T |
35786747 |
tctaattgaatatctagtaatc |
35786726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 35761919 - 35761798
Alignment:
| Q |
1 |
actatgtttctgtttgtgttggatattctgctgattatgttctgtaataatttttgtctgtgttgtgctttgaattcatgcgggctatggtt-tgctatt |
99 |
Q |
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|||||||||||||||||||||||| || ||| |||||||||||||| | | |||||| |||| |||||||||| ||||| | |||| ||| || |||| |
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| T |
35761919 |
actatgtttctgtttgtgttggatcttatgcagattatgttctgtattcacttttgtttgtgctgtgctttgatttcattttgtctatagttatgttatt |
35761820 |
T |
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| Q |
100 |
tcgaattgaatatctagaaatc |
121 |
Q |
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|| |||||||||||||| |||| |
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| T |
35761819 |
tctaattgaatatctagtaatc |
35761798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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