View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10627_low_2 (Length: 359)
Name: NF10627_low_2
Description: NF10627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10627_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 158 - 344
Target Start/End: Complemental strand, 30794255 - 30794069
Alignment:
| Q |
158 |
gtggtaataatcacactgcacacaataataaaaacgataatgacctaataaatagaaacttagaaaacaaatagaaactattaagtacactatttaaggg |
257 |
Q |
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| T |
30794255 |
gtggtaataatcacactgcacacaataataaaaacgataatgacctaataaatagaaacttagaaaacaaatagaaactattaagtacactatttaaggg |
30794156 |
T |
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| Q |
258 |
agaaggaattaaataccactacactattcaactatgcgctagcttgataagctcacaccactgctataagttcatccataacaaaat |
344 |
Q |
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| T |
30794155 |
agaaggaattaaataccactacactattcaactatgcgctagcttgataagctcacaccactgctataagttcatccataacaaaat |
30794069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 6 - 92
Target Start/End: Complemental strand, 30794407 - 30794321
Alignment:
| Q |
6 |
agaaagctatatcatattagtaaagcatattactattacaagaaaaacaaaactgttgcacttggcctcttcactcaaacacctcct |
92 |
Q |
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| T |
30794407 |
agaaagctatatcatattagtaaagcatattacaattacaagaaaaacaaaactgttgcacttggcctcttcactcaaacacctcct |
30794321 |
T |
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