View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10627_low_3 (Length: 339)
Name: NF10627_low_3
Description: NF10627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10627_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 14 - 324
Target Start/End: Original strand, 5665964 - 5666277
Alignment:
| Q |
14 |
agagttaaaatagaat---tcaaaaaagcttctagtttgatgtttatagactgggctgtcattaataattaggatgtttccccaaatgggagaatgtggg |
110 |
Q |
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| T |
5665964 |
agagttaaaatagaatagttcaaaaaagcttctagtttgatgtttatagactgggctgtcattaataattaggatgtttccccaaatgggagaatgtggg |
5666063 |
T |
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| Q |
111 |
ttgcttggaaccctagaatgtgggatatcaaagctgtatctagttgtgaagtggtgagccttcattcttgtgtttgtttccatttagttgtcgtgtatgt |
210 |
Q |
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| T |
5666064 |
ttgcttggaaccctagaatgtgggatatcaaagctgtatctagttgtgaagtggtgagccttcattcttgtgtttgtttccatttagttgtcgtgtatgt |
5666163 |
T |
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| Q |
211 |
atgctttcaacactcaggaacaaagaaaggagatctggctcattgaagatacctgcaacaaaatttctggaaattttctacttggaggagacttcaataa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5666164 |
atgctttcaacactcaggaacaaagaaaggagatctggctcattgaagatacctgcaacaaaatttctggaaattttctacttggaggagacttcaataa |
5666263 |
T |
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| Q |
311 |
tgtcttgttggtcg |
324 |
Q |
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| T |
5666264 |
tgtcttgttggtcg |
5666277 |
T |
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