View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10627_low_4 (Length: 339)
Name: NF10627_low_4
Description: NF10627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10627_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 330
Target Start/End: Complemental strand, 31200892 - 31200580
Alignment:
| Q |
18 |
ggtaacctcttcaaatgaagacactctccacccttttaatcatcttgtgaagcaattaggttcaagtgtatgtctcgaatagtttttatacttatgcaaa |
117 |
Q |
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| T |
31200892 |
ggtaacctcttcaaatgaagacactctccacccttttaatcattttgtgaagcaattaggttcaagtgtatgtctcgaatagtttttatacttatgcaaa |
31200793 |
T |
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| Q |
118 |
gtcattaacaattcataatgttatcatcttaaatcctttagaagttggttgctgcgtatgctacgaatggagaacaagctatactagaaaatgattttat |
217 |
Q |
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| T |
31200792 |
gtcatgaacaattcataatgttatcatcttaaatcatttagaagttggttgctgcgtatgctacaaatggagaacaagctatactagaaaatgattttat |
31200693 |
T |
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| Q |
218 |
cttatgtggaagtaactagtaagccgtgattaagtcataaccttaatatgtgtaatgaaaatattaggtatatgattaaaatattcatattctccaaaaa |
317 |
Q |
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| T |
31200692 |
cttatgtggaagtaactagtaagtcgtgattaagtcatatccttaatatgtgtaatgaaaatattaggtatatgattaaaatattcatattctccaaaaa |
31200593 |
T |
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| Q |
318 |
taatagcatcgaa |
330 |
Q |
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| T |
31200592 |
taatagcatcgaa |
31200580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 20 - 330
Target Start/End: Complemental strand, 31189083 - 31188773
Alignment:
| Q |
20 |
taacctcttcaaatgaagacactctccacccttttaatcatcttgtgaagcaattaggttcaagtgtatgtctcgaatagtttttatacttatgcaaagt |
119 |
Q |
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| T |
31189083 |
taacctcttcaaatgaagacactctccacccttttaatcatcttgtgaagaaattaggttcaagtgtatgtctcgaatagtttttatacttatgcaaagt |
31188984 |
T |
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| Q |
120 |
cattaacaattcataatgttatcatcttaaatcctttagaagttggttgctgcgtatgctacgaatggagaacaagctatactagaaaatgattttatct |
219 |
Q |
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| T |
31188983 |
catgaacaattcataatgttatcatcttaaatcatttagaagttggttgctgcgtatgctacaaatggagaacaagctatactagaaaatgattttatct |
31188884 |
T |
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| Q |
220 |
tatgtggaagtaactagtaagccgtgattaagtcataaccttaatatgtgtaatgaaaatattaggtatatgattaaaatattcatattctccaaaaata |
319 |
Q |
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| T |
31188883 |
tatgtggaagtaactagtaagtcgtgattaagtcatatccttaatatgtgtaatgaaaatattaggtatatgattaaaatattcatattctccaaaaata |
31188784 |
T |
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| Q |
320 |
atagcatcgaa |
330 |
Q |
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||||||||||| |
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| T |
31188783 |
atagcatcgaa |
31188773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 174 - 248
Target Start/End: Complemental strand, 31170982 - 31170908
Alignment:
| Q |
174 |
tatgctacgaatggagaacaagctatactagaaaatgattttatcttatgtggaagtaactagtaagccgtgatt |
248 |
Q |
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| T |
31170982 |
tatgctacaaatggagaacaagctatactagaaaatgtttttattttatgtggaagtcactagaaagccgtgatt |
31170908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 132 - 231
Target Start/End: Complemental strand, 31144869 - 31144770
Alignment:
| Q |
132 |
ataatgttatcatcttaa-atcctttagaagttggttgctgcgtatgctacgaatggagaacaagctatactagaaaatgattttatcttatgtggaagt |
230 |
Q |
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|||||||||||||||| | | |||||||||||| |||||||| |||||||| ||||||||||| | ||||||||||||| ||||||||||| ||||||| |
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| T |
31144869 |
ataatgttatcatctttataacctttagaagtttgttgctgcatatgctac-aatggagaacatgttatactagaaaatatttttatcttatttggaagt |
31144771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 31145001 - 31144935
Alignment:
| Q |
20 |
taacctcttcaaatgaagacactctccacccttttaatcatcttgtgaagcaattaggttcaagtgt |
86 |
Q |
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||||| |||||||||| ||| ||||||||||||||||||||||||||||| ||| |||| |||||| |
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| T |
31145001 |
taaccacttcaaatgataacaatctccacccttttaatcatcttgtgaagctattgggtttaagtgt |
31144935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 31171394 - 31171328
Alignment:
| Q |
20 |
taacctcttcaaatgaagacactctccacccttttaatcatcttgtgaagcaattaggttcaagtgt |
86 |
Q |
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|||||| |||||||||||||| |||||| || ||||||| |||||| |||||||| |||||||||| |
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| T |
31171394 |
taaccttttcaaatgaagacaatctccatccctttaatcttcttgttaagcaattgagttcaagtgt |
31171328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 238
Target Start/End: Original strand, 31225168 - 31225277
Alignment:
| Q |
127 |
aattcataatgttatcatcttaaatcctttagaagttggttgctgcgtatgctacgaatggagaacaagctatactagaaaatgattttatcttatgtgg |
226 |
Q |
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|||| ||||| ||| |||| || |||||||| ||||||| |||| || ||||| |||| | |||||||||||||| |||| | |||||||||||||| |
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| T |
31225168 |
aatttataattttaacatcatatatcctttataagttggcgactgcataagctacaaatgaaaaacaagctatactacaaaa--agtttatcttatgtgg |
31225265 |
T |
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| Q |
227 |
aagtaactagta |
238 |
Q |
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||| |||||||| |
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| T |
31225266 |
aagcaactagta |
31225277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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