View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10627_low_9 (Length: 241)
Name: NF10627_low_9
Description: NF10627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10627_low_9 |
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| [»] chr5 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 134 - 241
Target Start/End: Complemental strand, 41372876 - 41372769
Alignment:
| Q |
134 |
tgcctttataacactctttaagaatttaaaattaaataaatcaaatactttaaattccaatgcattgaatatgcaatttttcatagaaatttactgttta |
233 |
Q |
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| T |
41372876 |
tgcctttataacactctttaagaatttaaaattaaataaatcaaatactttaaattccaatgcattaaatatgcaatttttcatagaaatttactattta |
41372777 |
T |
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| Q |
234 |
aagtcctt |
241 |
Q |
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| T |
41372776 |
aagtcctt |
41372769 |
T |
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Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 41375160 - 41375068
Alignment:
| Q |
18 |
ccaacatcaccttcacaacctgtctttcatggtattctcattgnnnnnnngtaaagattattcacattgttttaccattattatttgacgggt |
110 |
Q |
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| T |
41375160 |
ccaacatccccttcacaacctgtctttcatggtattctcattgtttttttgtcaagattattcgcattgttttaccattattatttgacgggt |
41375068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 211
Target Start/End: Original strand, 6876927 - 6876973
Alignment:
| Q |
165 |
ttaaataaatcaaatactttaaattccaatgcattgaatatgcaatt |
211 |
Q |
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| T |
6876927 |
ttaaacaaattaaatactttaaattctaatgcattgaatatacaatt |
6876973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 46729217 - 46729278
Alignment:
| Q |
180 |
actttaaattccaatgcattgaatatgcaatttttcatagaaatttactgtttaaagtcctt |
241 |
Q |
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| T |
46729217 |
acttcaaattccgatgcattgaatgcacaattttccataaaaatttactatttaaagtcctt |
46729278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 14758617 - 14758665
Alignment:
| Q |
193 |
atgcattgaatatgcaatttttcatagaaatttactgtttaaagtcctt |
241 |
Q |
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| T |
14758617 |
atgcattgaatgcacaatttttcataaaaatttactatttaaagtcctt |
14758665 |
T |
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