View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10628_high_3 (Length: 282)
Name: NF10628_high_3
Description: NF10628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10628_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 35790140 - 35790407
Alignment:
| Q |
1 |
atgcgtcgatacaaattaaaaggaaaagagaaaataaatacagtttgacatcaaagagtaaatccatgcaaaaactgaagaatgaataaaagcaaaagga |
100 |
Q |
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| T |
35790140 |
atgcatcgatacaaattaaaaggaaaagagaaaataaaaacagtttgacatcaaagagtaa-tccatgcaaaaactgaagaatgaataaaagcaaaagga |
35790238 |
T |
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| Q |
101 |
aagaaactaacgttgtttttcgttatacgatgatgataatcggtaagccattatgacgatgatgttggtttggaacacaaacaaagacagtgttctgagt |
200 |
Q |
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| T |
35790239 |
aagaaactaacgttgtttttcgttatacgatgatgataatcggtaagccattatgacgatgatgttggtttggaacacaaacaaagacagtgttctgagg |
35790338 |
T |
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| Q |
201 |
tttctttctctcttgccttccaccaaatattacttcaaatcacttgtactatctctttatttatagcctatg |
272 |
Q |
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| T |
35790339 |
tttctttctctcttgccttccaccaaatattacttcaaaccacttg---tatctctttatttatagcctatg |
35790407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 35800337 - 35800394
Alignment:
| Q |
24 |
aaaagagaaaataaatacagtttgacatcaaagagtaaatccatgcaaaaactgaagaa |
82 |
Q |
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| T |
35800337 |
aaaagagaaaataaaaacagtttcacatcaaaga-tcaatccatgcaaaaactgaagaa |
35800394 |
T |
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