View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10628_high_5 (Length: 242)
Name: NF10628_high_5
Description: NF10628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10628_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 4 - 224
Target Start/End: Complemental strand, 35790027 - 35789805
Alignment:
| Q |
4 |
tgatcttataatgtcttgattttggctatgttcaagtagatat--caattgattctatttattcttttttgctaacagataattggttaccaacagtgcc |
101 |
Q |
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| T |
35790027 |
tgatcttataatgtcttgattttggctatgttcaagtagatatatcaattgattctatttattcttttttgctaacagataattggttaccaacagtgcc |
35789928 |
T |
|
| Q |
102 |
tttgtgggaaaagaagttttgtgcttcgattggctcagtaccatggcgaaagataatagaagtcaagaaatatatgtgtctgcatcccaatgtgataaac |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
35789927 |
tttgtgggaaaagaagttttgtgcttcgattggctcagtaccatggcgaaagataatagaagtcaagaaatatatgtgtctacatcccaatgtggtaaac |
35789828 |
T |
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| Q |
202 |
tgggacgattctgctgtcaaaga |
224 |
Q |
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|||||||||||||| |||||||| |
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| T |
35789827 |
tgggacgattctgccgtcaaaga |
35789805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 44 - 224
Target Start/End: Complemental strand, 35761195 - 35761015
Alignment:
| Q |
44 |
tatcaattgattctatttattcttttttgctaacagataattggttaccaacagtgcctttgtgggaaaagaagttttgtgcttcgattggctcagtacc |
143 |
Q |
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| T |
35761195 |
tatcaattgattctatttattccttttggttcgcagataataggtttccaacagtgcctttgtgggaaaagaagttttgtgaatcggttggctcagttcc |
35761096 |
T |
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| Q |
144 |
atggcgaaagataatagaagtcaagaaatatatgtgtctgcatcccaatgtgataaactgggacgattctgctgtcaaaga |
224 |
Q |
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| T |
35761095 |
atggcgaaaggtaatagaaggcaagaagtatatgtatctgcatcccaatgtggtaaactgggacgactctgctgtcaaaga |
35761015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 44 - 224
Target Start/End: Complemental strand, 35799627 - 35799448
Alignment:
| Q |
44 |
tatcaattgattctatttattcttttttgctaacagataattggttaccaacagtgcctttgtgggaaaagaagttttgtgcttcgattggctcagtacc |
143 |
Q |
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|||||||||||||||||||||||||| | | ||||||||| |||| |||||||||||||||||||||||| |||||||||||||| | |||||||| || |
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| T |
35799627 |
tatcaattgattctatttattcttttg-gttcacagataataggtttccaacagtgcctttgtgggaaaagcagttttgtgcttcggtgggctcagttcc |
35799529 |
T |
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| Q |
144 |
atggcgaaagataatagaagtcaagaaatatatgtgtctgcatcccaatgtgataaactgggacgattctgctgtcaaaga |
224 |
Q |
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| T |
35799528 |
atggcgaaagctaatagaagacaagaggtacatgtatatgcatcccaaagtggtaaactgggacgactctgctgtcaaaga |
35799448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 95 - 224
Target Start/End: Complemental strand, 35755986 - 35755857
Alignment:
| Q |
95 |
cagtgcctttgtgggaaaagaagttttgtgcttcgattggctcagtaccatggcgaaagataatagaagtcaagaaatatatgtgtctgcatcccaatgt |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||| ||||||| ||| ||||||||||| |
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| T |
35755986 |
cagtgcctttgtgggaaaagaagttttgtgcttcgattggtgcagttccatggcgaaagctaatagaagtcaagaggtatatgtctctacatcccaatgt |
35755887 |
T |
|
| Q |
195 |
gataaactgggacgattctgctgtcaaaga |
224 |
Q |
| |
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| T |
35755886 |
ggtaaactgggatgactctgctgtaaaaga |
35755857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 48 - 224
Target Start/End: Complemental strand, 35786129 - 35785953
Alignment:
| Q |
48 |
aattgattctatttattcttttttgctaacagataattggttaccaacagtgcctttgtgggaaaagaagttttgtgcttcgattggctcagtaccatgg |
147 |
Q |
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||||||||| || ||||| |||| | | |||| |||| |||| ||||||||||||| ||||||||||||||||||| |||| |||| ||||| |||||| |
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| T |
35786129 |
aattgattccatgtattccttttggttcacagctaataggtttccaacagtgccttcgtgggaaaagaagttttgtaattcggttggttcagttccatgg |
35786030 |
T |
|
| Q |
148 |
cgaaagataatagaagtcaagaaatatatgtgtctgcatcccaatgtgataaactgggacgattctgctgtcaaaga |
224 |
Q |
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||||| ||||||||| ||| || ||||||||||| || ||||| ||| |||||||| |||| |||||||||||||| |
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| T |
35786029 |
agaaaggtaatagaaggcaataagtatatgtgtcttcaccccaaagtggtaaactggaacgactctgctgtcaaaga |
35785953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 95 - 224
Target Start/End: Complemental strand, 35766627 - 35766498
Alignment:
| Q |
95 |
cagtgcctttgtgggaaaagaagttttgtgcttcgattggctcagtaccatggcgaaagataatagaagtcaagaaatatatgtgtctgcatcccaatgt |
194 |
Q |
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||||||||| |||||| ||||||||||||||| || |||||||||| | ||| ||| ||||||||| ||||| | ||||| ||||||||| | || |
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| T |
35766627 |
cagtgccttggtgggagaagaagttttgtgctacggttggctcagtttcgtggaagaaggtaatagaaggcaagaggtttatgtttctgcatccaacagt |
35766528 |
T |
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| Q |
195 |
gataaactgggacgattctgctgtcaaaga |
224 |
Q |
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||| ||||||||||| |||||||||||||| |
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| T |
35766527 |
gatcaactgggacgactctgctgtcaaaga |
35766498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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