View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10628_low_10 (Length: 250)
Name: NF10628_low_10
Description: NF10628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10628_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 43695427 - 43695672
Alignment:
| Q |
1 |
aaatttctttccatgtcaagatttgccctagcagcaatcagctttgcctttagcctccccgattccagctctaccgcagccacattgtccttcaactttt |
100 |
Q |
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| T |
43695427 |
aaatttctttccatgtcaagatttgccctagcagcaatcagctttgcctttagcctccccgattccagctctaccgcagccacattgtccttcaactttt |
43695526 |
T |
|
| Q |
101 |
caacttctacggctttctccacatagcttttaattcctaaagcagattgaacatggggatcaagccaagccatatcaaatttaaacttctcaagttcctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43695527 |
caacttctacggctttctccacatagcttttaattcctaaagcagattgaacatggggatcaagccaagccatatcaaatttaaacttctcaagttcctc |
43695626 |
T |
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| Q |
201 |
ccataaaacttgaagatccttacaagcctggtcattcatctctctc |
246 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
43695627 |
ccataaaacttgaagatccttacaagcctggtcattcatgtctctc |
43695672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 113 - 239
Target Start/End: Original strand, 43709432 - 43709558
Alignment:
| Q |
113 |
ctttctccacatagcttttaattcctaaagcagattgaacatggggatcaagccaagccatatcaaatttaaacttctcaagttcctcccataaaacttg |
212 |
Q |
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|||||||||| || ||||| |||| ||||||| |||||||||| || || |||||||||| ||||||| ||| ||||||||||||||||||||| ||| |
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| T |
43709432 |
ctttctccacgtaacttttcattcttaaagcaaattgaacatgaggctctagccaagccagatcaaatccaaatatctcaagttcctcccataaaatttg |
43709531 |
T |
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| Q |
213 |
aagatccttacaagcctggtcattcat |
239 |
Q |
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| T |
43709532 |
aagatccttgcaagcttgatcattcat |
43709558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 113 - 239
Target Start/End: Original strand, 43707708 - 43707834
Alignment:
| Q |
113 |
ctttctccacatagcttttaattcctaaagcagattgaacatggggatcaagccaagccatatcaaatttaaacttctcaagttcctcccataaaacttg |
212 |
Q |
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||||||||||| | ||||| |||||||||||| ||| ||||||| | || ||||||| | ||||||| |||| |||||||||||||| ||||||||| |
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| T |
43707708 |
ctttctccacaaaacttttcattcctaaagcacatttaacatggagctctagccaagtgagatcaaatctaaatttctcaagttcctcgtataaaacttt |
43707807 |
T |
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| Q |
213 |
aagatccttacaagcctggtcattcat |
239 |
Q |
| |
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| T |
43707808 |
agtatccttacaaggttggtcattcat |
43707834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 227
Target Start/End: Original strand, 43696407 - 43696443
Alignment:
| Q |
191 |
caagttcctcccataaaacttgaagatccttacaagc |
227 |
Q |
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||||||||||||| |||| |||||||||||||||||| |
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| T |
43696407 |
caagttcctcccagaaaatttgaagatccttacaagc |
43696443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 112 - 247
Target Start/End: Complemental strand, 15827370 - 15827235
Alignment:
| Q |
112 |
gctttctccacatagcttttaattcctaaagcagattgaacatggggatcaagccaagccatatcaaatttaaacttctcaagttcctcccataaaactt |
211 |
Q |
| |
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|||||||||| || ||||| |||||||||||| | |||||||| | || ||||||| |||||||||||||| ||| | ||||||||||||||||||| |
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| T |
15827370 |
gctttctccatgtatctttttattcctaaagcatagtgaacatgcgattctagccaagtaatatcaaatttaaatttcgctagttcctcccataaaactt |
15827271 |
T |
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| Q |
212 |
gaagatccttacaagcctggtcattcatctctctcg |
247 |
Q |
| |
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|||||||||||||||| || |||||||| ||||||| |
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| T |
15827270 |
gaagatccttacaagcttgttcattcatgtctctcg |
15827235 |
T |
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