View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10628_low_11 (Length: 242)
Name: NF10628_low_11
Description: NF10628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10628_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 43695448 - 43695224
Alignment:
| Q |
1 |
atcttgacatggaaagaaatttgttgaaaatgaaaggattcgaagaaagagatttggattctgaattgggatgtgggagttggagaccatagacttatag |
100 |
Q |
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| T |
43695448 |
atcttgacatggaaagaaatttgttgaaaacgaaaggattcgaagaaagagatttggattctgaattgggatgtgggagttggagaccatagacttatag |
43695349 |
T |
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| Q |
101 |
ctatgtatggattcatttcaatgtcgttcatagtattatattttgaatcattatatgaaatgtgnnnnnnnatctggttaacatactataccttgtttac |
200 |
Q |
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| T |
43695348 |
ctatgtatggattcatttcaatgtcgttcatagtattatattttgaatcattatatgaaatgtgtttttttatctggttaacatactataccttgtttac |
43695249 |
T |
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| Q |
201 |
catggttgttttttggtttagaagt |
225 |
Q |
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| T |
43695248 |
catggttgttttttggtttagaagt |
43695224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 15827460 - 15827530
Alignment:
| Q |
1 |
atcttgacatggaaagaaatttgttgaaaatgaaaggattcgaagaaagagatttggattctgaattggga |
71 |
Q |
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| T |
15827460 |
atcttgacatggaaagagacttgttgaaatccaaaggtttcaaagaattagatttagattctgaattggga |
15827530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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