View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10628_low_15 (Length: 226)

Name: NF10628_low_15
Description: NF10628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10628_low_15
NF10628_low_15
[»] chr3 (4 HSPs)
chr3 (1-226)||(47452317-47452545)
chr3 (1-91)||(11006372-11006462)
chr3 (5-91)||(11015939-11016025)
chr3 (1-83)||(11024947-11025029)
[»] chr4 (9 HSPs)
chr4 (1-92)||(7789666-7789757)
chr4 (1-89)||(48156837-48156925)
chr4 (1-92)||(7770981-7771072)
chr4 (1-88)||(7800218-7800305)
chr4 (1-88)||(7813061-7813148)
chr4 (1-91)||(7822547-7822637)
chr4 (20-90)||(7907904-7907974)
chr4 (9-90)||(7877299-7877380)
chr4 (8-88)||(45366638-45366718)
[»] chr8 (4 HSPs)
chr8 (1-62)||(12194908-12194969)
chr8 (1-62)||(12439336-12439397)
chr8 (1-62)||(12199914-12199975)
chr8 (1-62)||(12444342-12444403)


Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 47452317 - 47452545
Alignment:
Q  1 aaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggatctggattatcaattcaagaggtagatacaagatctccg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  47452317 aaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaccaagatctggattatcaattcaagaggtagatacaagatctccg 47452416  T
Q  101 tctcaataagtct---tcctcctttaccaccgttctttgtcatcgttctggtcaacttgatttagttggtaggatgataatgaacaacttgccattcatg 197  Q
    |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47452417 tctcaataagtcttcctcctcctttaccaccgttctttgtcatcgttctggtcaacttgatttagttggtaggatgataatgaacaacttgccattcatg 47452516  T
Q  198 aattgnnnnnnncctgagattcatgcaaa 226  Q
    |||||       |||||||||||||||||    
T  47452517 aattgtttttttcctgagattcatgcaaa 47452545  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 11006372 - 11006462
Alignment:
Q  1 aaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggatctggattatcaattcaagaggtagataca 91  Q
    |||||||||||| |||  |||||||| |||| ||| |||||||||||||||||||||| ||| || || ||||||||| |||| |||||||    
T  11006372 aaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatgatcaattcatgaggcagataca 11006462  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 91
Target Start/End: Original strand, 11015939 - 11016025
Alignment:
Q  5 atgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggatctggattatcaattcaagaggtagataca 91  Q
    |||||||| ||| ||| ||||| ||||  |||||||||||||| |||||||||| ||| || |||||||||||| |||| |||||||    
T  11015939 atgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacctcaacatgatttgtattatcaattcatgaggcagataca 11016025  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 11024947 - 11025029
Alignment:
Q  1 aaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggatctggattatcaattcaagagg 83  Q
    |||||||||||| ||| ||| ||||| ||||  |||||||||||||| |||||||||| ||| || || ||||||||| ||||    
T  11024947 aaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacctcaacatgatttgtatgatcaattcatgagg 11025029  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 7789757 - 7789666
Alignment:
Q  1 aaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggatctggattatcaattcaagaggtagatacaa 92  Q
    ||||| |||||| ||| ||| ||||| | || ||||||||||||||||||||||| ||| || |||||||||| |||| |||| ||||||||    
T  7789757 aaccaagacttacaaacgcatttgaaacatataagagacttcaccggcaacctcatcagaatttggattatcagttcatgaggcagatacaa 7789666  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 48156837 - 48156925
Alignment:
Q  1 aaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggatctggattatcaattcaagaggtagata 89  Q
    ||||| |||||| ||| ||||||||| |||| ||||||||||||||| ||||  || ||||| || |||||||||||||| || |||||    
T  48156837 aaccaagacttacaaacgcacttgaaacgtagaagagacttcaccggtaaccataaaaggatttgaattatcaattcaagtggcagata 48156925  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 7771072 - 7770981
Alignment:
Q  1 aaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggatctggattatcaattcaagaggtagatacaa 92  Q
    ||||| |||||| ||| ||| ||||| | || ||||||||||||||||||||||| ||| || |||||||| | |||| |||| ||||||||    
T  7771072 aaccaagacttacaaacgcatttgaaacatataagagacttcaccggcaacctcatcagaatttggattattagttcatgaggcagatacaa 7770981  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 7800305 - 7800218
Alignment:
Q  1 aaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggatctggattatcaattcaagaggtagat 88  Q
    |||||||| ||| |||  |||||||| |||| |||| ||||||||||||||||||||| |||  |||||||||| ||| |||| ||||    
T  7800305 aaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacctcaacaagattaggattatcaaatcatgaggcagat 7800218  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 7813148 - 7813061
Alignment:
Q  1 aaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggatctggattatcaattcaagaggtagat 88  Q
    |||||||| ||| |||  |||||||| |||| |||| ||||||||||||||||||||| |||  |||||||||| ||| |||| ||||    
T  7813148 aaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacctcaacaagattaggattatcaaatcatgaggcagat 7813061  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 7822637 - 7822547
Alignment:
Q  1 aaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggatctggattatcaattcaagaggtagataca 91  Q
    |||||||| ||| |||  |||||||| |||| |||| ||||||||||||||||||||| |||  |||||||||| | | |||| |||||||    
T  7822637 aaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacctcaacaagattaggattatcaaatgatgaggcagataca 7822547  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 7907974 - 7907904
Alignment:
Q  20 acttgaagcgtacaagagacttcaccggcaacctcaacaggatctggattatcaattcaagaggtagatac 90  Q
    ||||||| |||  |||||||||||||||||||||||  ||||||||||  ||||||||| |||| ||||||    
T  7907974 acttgaaacgtgtaagagacttcaccggcaacctcagtaggatctggaaaatcaattcatgaggaagatac 7907904  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 7877380 - 7877299
Alignment:
Q  9 cttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggatctggattatcaattcaagaggtagatac 90  Q
    |||| ||||||| ||||| |||| ||||||||||||| ||||||  | |||||| ||||| ||||||||| |||| ||||||    
T  7877380 cttacaaatgcatttgaaacgtataagagacttcaccagcaaccaaatcaggatttggataatcaattcatgaggaagatac 7877299  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 45366638 - 45366718
Alignment:
Q  8 acttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggatctggattatcaattcaagaggtagat 88  Q
    ||||| ||| ||||||||| |||| |||||||||||| || ||||| |  ||||| ||||| ||||||||| |||| ||||    
T  45366638 acttacaaacgcacttgaaacgtataagagacttcactggtaaccttagtaggatttggatcatcaattcatgaggaagat 45366718  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 12194969 - 12194908
Alignment:
Q  1 aaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggat 62  Q
    |||||||||||| ||||||| ||||| | || ||||||||||||||||||||||| ||||||    
T  12194969 aaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggat 12194908  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 12439397 - 12439336
Alignment:
Q  1 aaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggat 62  Q
    |||||||||||| ||||||| ||||| | || ||||||||||||||||||||||| ||||||    
T  12439397 aaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggat 12439336  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 12199975 - 12199914
Alignment:
Q  1 aaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggat 62  Q
    |||||||||||| |||  || ||||| | || ||||||||||||||||||||||| ||||||    
T  12199975 aaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggat 12199914  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 12444403 - 12444342
Alignment:
Q  1 aaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggat 62  Q
    |||||||||||| |||  || ||||| | || ||||||||||||||||||||||| ||||||    
T  12444403 aaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggat 12444342  T

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