View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10628_low_16 (Length: 214)
Name: NF10628_low_16
Description: NF10628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10628_low_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 174; Significance: 8e-94; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 13 - 190
Target Start/End: Original strand, 26690329 - 26690506
Alignment:
| Q |
13 |
caaaggagagagtgaatttcttgctgaagttagcgtcattggaaggcttaaccacatgaatttgattggtatgtgggggtattgtgcagagggaaaacac |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26690329 |
caaaggagagagtgaatttcttgctgaagttagcgtcattggaaggcttaaccacatgaatttgattggtatgtgggggtattgtgcagagggaaaacac |
26690428 |
T |
|
| Q |
113 |
agattgttagtttttgagtacatggaaaaaggttctttagcggataatttctcatcaaatgcacttaattggggtaag |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
26690429 |
agattgttagtttttgagtacatggaaaaaggttctttagcggataatttgtcatcaaatgcacttaattggggtaag |
26690506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 13 - 190
Target Start/End: Original strand, 26731640 - 26731817
Alignment:
| Q |
13 |
caaaggagagagtgaatttcttgctgaagttagcgtcattggaaggcttaaccacatgaatttgattggtatgtgggggtattgtgcagagggaaaacac |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26731640 |
caaaggagagagtgaatttcttgctgaagttagcgtcattggaaggcttaaccacatgaatttgattggtatgtgggggtattgtgcagagggaaaacac |
26731739 |
T |
|
| Q |
113 |
agattgttagtttttgagtacatggaaaaaggttctttagcggataatttctcatcaaatgcacttaattggggtaag |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
26731740 |
agattgttagtttttgagtacatggaaaaaggttctttagcggataatttgtcatcaaatgcacttaattggggtaag |
26731817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 13 - 190
Target Start/End: Original strand, 26694490 - 26694667
Alignment:
| Q |
13 |
caaaggagagagtgaatttcttgctgaagttagcgtcattggaaggcttaaccacatgaatttgattggtatgtgggggtattgtgcagagggaaaacac |
112 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26694490 |
caaagaagagagtgaatttcttgctgaacttagcgtcattggaaggcttaaccacatgaatttgattggtatgtgggggtattgtgcagagggaaaacac |
26694589 |
T |
|
| Q |
113 |
agattgttagtttttgagtacatggaaaaaggttctttagcggataatttctcatcaaatgcacttaattggggtaag |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
26694590 |
agattgttagtttttgagtacatggaaaaaggttctttaactgataatttgtcatcaaatgcgcttaattggggtaag |
26694667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 20 - 190
Target Start/End: Complemental strand, 26751281 - 26751111
Alignment:
| Q |
20 |
gagagtgaatttcttgctgaagttagcgtcattggaaggcttaaccacatgaatttgattggtatgtgggggtattgtgcagagggaaaacacagattgt |
119 |
Q |
| |
|
|||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| || ||||||| |
|
|
| T |
26751281 |
gagagtgagtttcttgccgaagttagcatcattggaaggcttaaccacatgaatttgattggtatgtggggttattgtgctgagggaaagcatagattgt |
26751182 |
T |
|
| Q |
120 |
tagtttttgagtacatggaaaaaggttctttagcggataatttctcatcaaatgcacttaattggggtaag |
190 |
Q |
| |
|
| |||| ||||||||||||||| ||| ||||||| |||||| |||||||||||| |||| ||||||||||| |
|
|
| T |
26751181 |
tggtttatgagtacatggaaaagggtactttagctgataatctctcatcaaatgaacttgattggggtaag |
26751111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 26698962 - 26698788
Alignment:
| Q |
15 |
aaggagagagtgaatttcttgctgaagttagcgtcattggaaggcttaaccacatgaatttgattggtatgtgggggtattgtgcagagggaaaacacag |
114 |
Q |
| |
|
|||||| || ||| |||||||||||||||||| |||||||||||||||| |||||||||||||| || |||||||| |||||||| |||||||||||||| |
|
|
| T |
26698962 |
aaggagggaatgagtttcttgctgaagttagcatcattggaaggcttaatcacatgaatttgataggaatgtggggttattgtgccgagggaaaacacag |
26698863 |
T |
|
| Q |
115 |
attgttagtttttgagtacatggaaaaaggttctttagcggataatttctcatcaaatgcacttaattggggtaa |
189 |
Q |
| |
|
|||||| |||| ||||||||||||||| ||| ||||||| |||||| ||||||||| || |||| |||||||||| |
|
|
| T |
26698862 |
attgttggtttatgagtacatggaaaatggtactttagctgataatctctcatcaagtgaacttgattggggtaa |
26698788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 26714114 - 26713943
Alignment:
| Q |
15 |
aaggagagagtgaatttcttgctgaagttagcgtcattggaaggcttaaccacatgaatttgattggtatgtgggggtattgtgcagagggaaaacacag |
114 |
Q |
| |
|
||||||| ||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||| | |
|
|
| T |
26714114 |
aaggagatagtgagtttcttgcagaagttagcatcattggaaggcttaaccacatgaatttgattggaatgtggggttattgtgctgagggaaaacataa |
26714015 |
T |
|
| Q |
115 |
attgttagtttttgagtacatggaaaaaggttctttagcggataatttctcatcaaatgcacttaattgggg |
186 |
Q |
| |
|
|||||| |||| ||||||||||||||| ||| ||||||| |||||| ||| |||||||| |||| ||||||| |
|
|
| T |
26714014 |
attgttggtttatgagtacatggaaaatggtactttagctgataatctcttatcaaatgaacttgattgggg |
26713943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 26737350 - 26737179
Alignment:
| Q |
15 |
aaggagagagtgaatttcttgctgaagttagcgtcattggaaggcttaaccacatgaatttgattggtatgtgggggtattgtgcagagggaaaacacag |
114 |
Q |
| |
|
||||||| ||||| |||||||| ||||||||| |||||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||| | |
|
|
| T |
26737350 |
aaggagacagtgagtttcttgcagaagttagcatcattggaaggcttaaccacatgaatttaattggaatgtggggttattgtgctgagggaaaacataa |
26737251 |
T |
|
| Q |
115 |
attgttagtttttgagtacatggaaaaaggttctttagcggataatttctcatcaaatgcacttaattgggg |
186 |
Q |
| |
|
|||||| |||| ||||||||||||||| ||| ||||||| |||||| |||||||||||| |||| ||||||| |
|
|
| T |
26737250 |
attgttggtttatgagtacatggaaaatggtactttagctgataatctctcatcaaatgaacttgattgggg |
26737179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 26734125 - 26733951
Alignment:
| Q |
15 |
aaggagagagtgaatttcttgctgaagttagcgtcattggaaggcttaaccacatgaatttgattggtatgtgggggtattgtgcagagggaaaacacag |
114 |
Q |
| |
|
|||||| || ||| ||||||| |||||||||| |||||||||||||||| |||||||||||||| || |||||||| |||||||| |||||||||||||| |
|
|
| T |
26734125 |
aaggagggaatgagtttcttgttgaagttagcatcattggaaggcttaatcacatgaatttgataggaatgtggggttattgtgccgagggaaaacacag |
26734026 |
T |
|
| Q |
115 |
attgttagtttttgagtacatggaaaaaggttctttagcggataatttctcatcaaatgcacttaattggggtaa |
189 |
Q |
| |
|
|||||| |||| ||||||||||||||| ||| ||||||| |||||| ||||||||| || |||| |||||||||| |
|
|
| T |
26734025 |
attgttggtttatgagtacatggaaaatggtactttagctgataatctctcatcaagtgaacttgattggggtaa |
26733951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 20 - 189
Target Start/End: Complemental strand, 26744356 - 26744187
Alignment:
| Q |
20 |
gagagtgaatttcttgctgaagttagcgtcattggaaggcttaaccacatgaatttgattggtatgtgggggtattgtgcagagggaaaacacagattgt |
119 |
Q |
| |
|
|||||||| |||||||||||||| ||| ||||||||||||||||||||||||| || |||||||||||||| |||||||| ||||||||||| ||||||| |
|
|
| T |
26744356 |
gagagtgagtttcttgctgaagtaagcatcattggaaggcttaaccacatgaacttaattggtatgtggggctattgtgctgagggaaaacatagattgt |
26744257 |
T |
|
| Q |
120 |
tagtttttgagtacatggaaaaaggttctttagcggataatttctcatcaaatgcacttaattggggtaa |
189 |
Q |
| |
|
| |||| |||| ||||||||| ||| ||||||| |||||| | ||||||||| |||| ||||| |||| |
|
|
| T |
26744256 |
tggtttacgagtgcatggaaaacggtactttagccgataatctttcatcaaataaacttgattggagtaa |
26744187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 50 - 190
Target Start/End: Complemental strand, 26675715 - 26675575
Alignment:
| Q |
50 |
attggaaggcttaaccacatgaatttgattggtatgtgggggtattgtgcagagggaaaacacagattgttagtttttgagtacatggaaaaaggttctt |
149 |
Q |
| |
|
||||||| ||| ||||| ||||| || ||||| |||| |||||||||| || ||||||||||||||||| ||||| |||| | | ||||| ||||||| |
|
|
| T |
26675715 |
attggaatgctcaaccatatgaacttaattggcatgttggggtattgtttagccggaaaacacagattgttggttttagagttcgtagaaaagggttctt |
26675616 |
T |
|
| Q |
150 |
tagcggataatttctcatcaaatgcacttaattggggtaag |
190 |
Q |
| |
|
|||| || || ||||||||||||||||| ||||||||||| |
|
|
| T |
26675615 |
tagctgaaaacctctcatcaaatgcacttgattggggtaag |
26675575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 49 - 153
Target Start/End: Complemental strand, 47212491 - 47212387
Alignment:
| Q |
49 |
cattggaaggcttaaccacatgaatttgattggtatgtgggggtattgtgcagagggaaaacacagattgttagtttttgagtacatggaaaaaggttct |
148 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||| || | || | ||||| |||||| || |||||| |
|
|
| T |
47212491 |
cattggaaagcttaaccacatgaatttgattgaaatgtggggttattgtgcagagggaaaacatagaatgcttgtgtatgagttcatggataatggttct |
47212392 |
T |
|
| Q |
149 |
ttagc |
153 |
Q |
| |
|
||||| |
|
|
| T |
47212391 |
ttagc |
47212387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 26 - 153
Target Start/End: Complemental strand, 18658870 - 18658743
Alignment:
| Q |
26 |
gaatttcttgctgaagttagcgtcattggaaggcttaaccacatgaatttgattggtatgtgggggtattgtgcagagggaaaacacagattgttagttt |
125 |
Q |
| |
|
||||||||||||||||| ||| |||||||| |||||||||||||||| ||||||| ||||||||| |||||||| || || || || ||| | || || | |
|
|
| T |
18658870 |
gaatttcttgctgaagtaagcatcattggacggcttaaccacatgaacttgattgatatgtggggatattgtgctgaaggtaagcatagacttttggtat |
18658771 |
T |
|
| Q |
126 |
ttgagtacatggaaaaaggttctttagc |
153 |
Q |
| |
|
||||||||||||||| || |||||||| |
|
|
| T |
18658770 |
atgagtacatggaaaatggatctttagc |
18658743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 29 - 156
Target Start/End: Complemental strand, 21130705 - 21130578
Alignment:
| Q |
29 |
tttcttgctgaagttagcgtcattggaaggcttaaccacatgaatttgattggtatgtgggggtattgtgcagagggaaaacacagattgttagtttttg |
128 |
Q |
| |
|
|||||||||||||| ||| |||||| || ||||||||||||||||||||||| |||||||| ||||||| || || || || ||| | || || | || |
|
|
| T |
21130705 |
tttcttgctgaagtaagcatcattgaaaagcttaaccacatgaatttgattgaaatgtggggatattgtgttgaaggtaagcatagaattttggtatatg |
21130606 |
T |
|
| Q |
129 |
agtacatggaaaaaggttctttagcgga |
156 |
Q |
| |
|
||||||||||||| |||||||||||||| |
|
|
| T |
21130605 |
agtacatggaaaatggttctttagcgga |
21130578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 21108112 - 21108250
Alignment:
| Q |
15 |
aaggagagagtgaatttcttgctgaagttagcgtcattggaaggcttaaccacatgaatttgattggtatgtgggggtattgtgcagagggaaaacacag |
114 |
Q |
| |
|
||||||| |||||||||| |||||||| | |||||||||||||||| |||||||||||||| | |||||||| ||||| || ||||||||| | || |
|
|
| T |
21108112 |
aaggagaaggtgaatttctagctgaagtaggaatcattggaaggcttaatcacatgaatttgatcgaaatgtggggatattgcgctgagggaaaatatag |
21108211 |
T |
|
| Q |
115 |
attgttagtttttgagtacatggaaaaaggttctttagc |
153 |
Q |
| |
|
| | || |||| |||||||||||||| ||||||||||| |
|
|
| T |
21108212 |
actattggtttacgagtacatggaaaatggttctttagc |
21108250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 24 - 153
Target Start/End: Original strand, 21098502 - 21098631
Alignment:
| Q |
24 |
gtgaatttcttgctgaagttagcgtcattggaaggcttaaccacatgaatttgattggtatgtgggggtattgtgcagagggaaaacacagattgttagt |
123 |
Q |
| |
|
|||||||||| |||||||| | |||||||||||||||| |||||||||||||| | |||||||| ||||| || ||||||||| | ||| | || || |
|
|
| T |
21098502 |
gtgaatttctagctgaagtaggaatcattggaaggcttaatcacatgaatttgatcgaaatgtggggatattgcgctgagggaaaatatagactattggt |
21098601 |
T |
|
| Q |
124 |
ttttgagtacatggaaaaaggttctttagc |
153 |
Q |
| |
|
|| |||||||||||||| ||||||||||| |
|
|
| T |
21098602 |
ttacgagtacatggaaaatggttctttagc |
21098631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 50 - 153
Target Start/End: Complemental strand, 29213252 - 29213149
Alignment:
| Q |
50 |
attggaaggcttaaccacatgaatttgattggtatgtgggggtattgtgcagagggaaaacacagattgttagtttttgagtacatggaaaaaggttctt |
149 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||| ||| ||| |||| || | ||||| |||| | || ||||||| |
|
|
| T |
29213252 |
attggaaagcttaaccacatgaatttgattgaattgtggggttattgtgcagagggaatacatagaatgtttgtctatgagttcatgtataatggttctt |
29213153 |
T |
|
| Q |
150 |
tagc |
153 |
Q |
| |
|
|||| |
|
|
| T |
29213152 |
tagc |
29213149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 26 - 153
Target Start/End: Complemental strand, 21111748 - 21111621
Alignment:
| Q |
26 |
gaatttcttgctgaagttagcgtcattggaaggcttaaccacatgaatttgattggtatgtgggggtattgtgcagagggaaaacacagattgttagttt |
125 |
Q |
| |
|
||||||||||| ||||| || |||||||| |||||||||||||||| ||||| | |||||||| |||||||| || || || || ||| | || || | |
|
|
| T |
21111748 |
gaatttcttgccgaagtaagtatcattggacggcttaaccacatgaacttgatagaaatgtggggatattgtgctgaaggtaagcatagacttttggtat |
21111649 |
T |
|
| Q |
126 |
ttgagtacatggaaaaaggttctttagc |
153 |
Q |
| |
|
||||||||||||||| || |||||||| |
|
|
| T |
21111648 |
atgagtacatggaaaatggatctttagc |
21111621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 39132031 - 39132100
Alignment:
| Q |
29 |
tttcttgctgaagttagcgtcattggaaggcttaaccacatgaatttgattggtatgtgggggtattgtg |
98 |
Q |
| |
|
|||||||||||||| ||| |||| |||||||| || |||||||| || |||| |||||||| ||||||| |
|
|
| T |
39132031 |
tttcttgctgaagtaagcatcatcggaaggctcaatcacatgaacttaattgaaatgtggggatattgtg |
39132100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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