View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10628_low_3 (Length: 403)
Name: NF10628_low_3
Description: NF10628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10628_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 15 - 399
Target Start/End: Original strand, 21444878 - 21445262
Alignment:
| Q |
15 |
aatgtgtctaaattatatattctttagaacaaagcaaaaaccaaaatggaaaccagtataacaataagatatattttttggatattattcatgcaaaaac |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21444878 |
aatgtgtctaaattatatattctttagaacaaagcaaaaaccaaaatggaaaccagtataacaataagatatattttttggatattattcatgcaaaaac |
21444977 |
T |
|
| Q |
115 |
gataccttaaagttgaccttgaccctagaaatctaaaaaagttttggtcactttagtatttacatgcaggacattgtaatttgtaatacagcttattgaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21444978 |
gataccttaaagttgaccttgaccctagaaatctaaaaaagttttggtcactttagtatttacatgcaggacattgtaatttgtaatacagcttattgaa |
21445077 |
T |
|
| Q |
215 |
aaagctaccnnnnnnnccaaattctgtttggttgtgataattgtattaaagagagaataccctactacctttgaggagcaccagaaaggattggatcagc |
314 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21445078 |
aaagctaccaaaaaaaccaaattctgtttggttgtgataattgtattaaagagagaataccctactacctttgaggagcaccagaaaggattggatcagc |
21445177 |
T |
|
| Q |
315 |
tgaactatgctttcctaatgcaggaatactaagagaacgttttcttaatttggctctaccatttgatgatagtttcttctcactc |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21445178 |
tgaactatgctttcctaatgcaggaatactaagagaacgttttcttaatttggctctaccatttgatgatagtttcttctcactc |
21445262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University