View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10628_low_4 (Length: 381)
Name: NF10628_low_4
Description: NF10628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10628_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 134; Significance: 1e-69; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 17 - 150
Target Start/End: Original strand, 26016568 - 26016701
Alignment:
| Q |
17 |
aaaaccggccaaactattgtgaaccaacgtaagtacgtagctaatttatcttaacctatcccaaataacagccctacaaatattcggtcaaagtacttaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26016568 |
aaaaccggccaaactattgtgaaccaacgtaagtacgtagctaatttatcttaacctatcccaaataacagccctacaaatattcggtcaaagtacttaa |
26016667 |
T |
|
| Q |
117 |
acaacgttttaattgtcaaaccctgtcttctttc |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
26016668 |
acaacgttttaattgtcaaaccctgtcttctttc |
26016701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 23 - 147
Target Start/End: Complemental strand, 26019772 - 26019645
Alignment:
| Q |
23 |
ggccaaactattgtgaaccaac---gtaagtacgtagctaatttatcttaacctatcccaaataacagccctacaaatattcggtcaaagtacttaaaca |
119 |
Q |
| |
|
|||||||| ||||||||||||| ||||| |||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
26019772 |
ggccaaaccattgtgaaccaacaacgtaaggacgtagctaatttatcttaacccatccgaaataacagccccacaaatattcggtcaaagtacttaaaca |
26019673 |
T |
|
| Q |
120 |
acgttttaattgtcaaaccctgtcttct |
147 |
Q |
| |
|
|||||||||| ||||||||||||||||| |
|
|
| T |
26019672 |
acgttttaatagtcaaaccctgtcttct |
26019645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 256 - 337
Target Start/End: Original strand, 26016802 - 26016883
Alignment:
| Q |
256 |
tgtcttgttccgttgcaattccaaattctcctatattctctctttcctcttcccattacttcaccaaaaattgctatatcat |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26016802 |
tgtcttgttccgttgcaattccaaattctcctatattctctctttcctcttcccattacttcaccaaaaattgctatatcat |
26016883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 26016718 - 26016757
Alignment:
| Q |
172 |
gtcaaaccttgtcttctctataacactacttatactaaat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26016718 |
gtcaaaccttgtcttctctataacactacttatactaaat |
26016757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University