View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10628_low_5 (Length: 376)
Name: NF10628_low_5
Description: NF10628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10628_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 15 - 361
Target Start/End: Complemental strand, 3686860 - 3686514
Alignment:
| Q |
15 |
ggaggcttagctgtgataatttgaagaaacattatccctaaagaataaatatctgattttgttgttaattttcctgtattttgatactctggatcaatgt |
114 |
Q |
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| T |
3686860 |
ggaggcttagctgtgataatttgaagaaacattatccctaaagaataaatatctgattttgttgttaattttcctgtattttgatactctggatcaatgt |
3686761 |
T |
|
| Q |
115 |
aacataacgttccagctgcttcagtcatgtaatattgtgtgacagaatcagctacagaaggtggtactaatcttgctaaaccaacatcacttattttgct |
214 |
Q |
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| T |
3686760 |
aacataatgttccagctgcttcagtcatgtgatattgtgtgacagaatcagctacagaaggtggtactaatcttgctaaaccaacatcacttattttgct |
3686661 |
T |
|
| Q |
215 |
aacaaaatttttgtctaagagaatgttggctggtttaaggtctctatgaacaattgcttctggttttgtttggtgaaggaaaagaagtgctgttgcaatt |
314 |
Q |
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| T |
3686660 |
aacaaaatttttgtctaagagaatgttggctggtttaaggtctctatgaacaattgcttctggttttgtttggtgaaggaaaagaagtgctgttgcaatt |
3686561 |
T |
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| Q |
315 |
tcataagctatttcgaaacgttttcgccatggaattggaggggtgtt |
361 |
Q |
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| T |
3686560 |
tcataagctatttcgaaacgttttcgccatggaattggaggggtgtt |
3686514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 11 - 313
Target Start/End: Original strand, 48235636 - 48235938
Alignment:
| Q |
11 |
cataggaggcttagctgtgataatttgaagaaacattatccctaaagaataaatatctgattttgttgttaattttcctgtattttgatactctggatca |
110 |
Q |
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| T |
48235636 |
cataggaggcctggctgtgattatctgcagtagcattatccctaatgaatatatatctgattttggtgttaacattcctgtttgttgatactcgggatca |
48235735 |
T |
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| Q |
111 |
atgtaacataacgttccagctgcttcagtcatgtaatattgtgtgacagaatcagctacagaaggtggtactaatcttgctaaaccaacatcacttattt |
210 |
Q |
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|| ||||| || |||||||| ||| |||||||||||||||||| || |||||||||||||| || ||||||||||| | ||| |||||| | || |
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| T |
48235736 |
atataacaaaatgttccagcagctgaagtcatgtaatattgtgtcacgctgtcagctacagaaggaggaactaatcttgcgagaccgacatcagcgactt |
48235835 |
T |
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| Q |
211 |
tgctaacaaaatttttgtctaagagaatgttggctggtttaaggtctctatgaacaattgcttctggttttgtttggtgaaggaaaagaagtgctgttgc |
310 |
Q |
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| T |
48235836 |
tgctcacgtaatttttgtctaacaaaatgtttgatggtttaaggtctcgatgcacgattggctctggctttgtttggtgaaggaaaagaagtgcagttgc |
48235935 |
T |
|
| Q |
311 |
aat |
313 |
Q |
| |
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||| |
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|
| T |
48235936 |
aat |
48235938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 166 - 301
Target Start/End: Complemental strand, 42674033 - 42673898
Alignment:
| Q |
166 |
ctacagaaggtggtactaatcttgctaaaccaacatcacttattttgctaacaaaatttttgtctaagagaatgttggctggtttaaggtctctatgaac |
265 |
Q |
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||||||||||||| || | ||||| ||||||||||| || || ||||| || | ||| |||||||||||||||| |||||||| || || | ||| || |
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| T |
42674033 |
ctacagaaggtggaacaagccttgccaaaccaacatcgctgatcttgcttacgtagtttctgtctaagagaatgtttgctggtttgagatcgcgatgcac |
42673934 |
T |
|
| Q |
266 |
aattgcttctggttttgtttggtgaaggaaaagaag |
301 |
Q |
| |
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|| | |||||||||||| ||||||||||||||||| |
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| T |
42673933 |
aaccggttctggttttgtctggtgaaggaaaagaag |
42673898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 192 - 352
Target Start/End: Complemental strand, 6516858 - 6516698
Alignment:
| Q |
192 |
aaaccaacatcacttattttgctaacaaaatttttgtctaagagaatgttggctggtttaaggtctctatgaacaattgcttctggttttgtttggtgaa |
291 |
Q |
| |
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|||||||||||||| || |||||||| | |||||||||||||||||||| ||||||| | || | ||| || |||| ||||| |||| |||||||| |
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| T |
6516858 |
aaaccaacatcactgatcttgctaacgtagtttttgtctaagagaatgtttcctggtttcatatcacgatgtactattggatctggctttgattggtgaa |
6516759 |
T |
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| Q |
292 |
ggaaaagaagtgctgttgcaatttcataagctatttcgaaacgttttcgccatggaattgg |
352 |
Q |
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|||||||||| | || ||||| ||||| || |||| ||||| ||| |||||||||||| |
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| T |
6516758 |
ggaaaagaaggccagtggcaatctcatatgcaattttaaaacgatttttccatggaattgg |
6516698 |
T |
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