View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10628_low_6 (Length: 344)
Name: NF10628_low_6
Description: NF10628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10628_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 15 - 333
Target Start/End: Complemental strand, 37769094 - 37768764
Alignment:
| Q |
15 |
aagaaacacacactatactttctcgattcaaattccaactatccacaattgataatgacttac----atatatatacaatagattaacttgaatatgttt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37769094 |
aagaaacacacactatactttctcgattcaaattccaactatccacaactgataatgacttacgtacatatatatacaatagattaacttgaatatgttt |
37768995 |
T |
|
| Q |
111 |
tgtannnnnnnnn-cttactatacaggaagagaccgaagatgacttggagagtgttttacctttcacttctaagtggattatttgcgtatg-----tatc |
204 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37768994 |
tgtattttttttttcttactatacaggaagagaccgaagatgacttggagagtgttttacctttcacttctaagtggattatttgcgtatgtatcgtatc |
37768895 |
T |
|
| Q |
205 |
attcttaattaataactcattctataaatgttacattttgattcattaattaataaaagtgatgaaaatg-ctatatatgtgaatg-caatgcaatgcaa |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||| |||||||||||| |
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| T |
37768894 |
attcttaattaataactcattctataaatgttacattttgattcattaattaataaaagtgatgaaaatgcctatatatatatatgtgaatgcaatgcaa |
37768795 |
T |
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| Q |
303 |
tgcaacagcggacttttatttcaaaacctat |
333 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
37768794 |
tgcaacagcggacttttatttcaaaacctat |
37768764 |
T |
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