View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10628_low_8 (Length: 268)
Name: NF10628_low_8
Description: NF10628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10628_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 20 - 256
Target Start/End: Complemental strand, 48056886 - 48056650
Alignment:
| Q |
20 |
tgtctagccaagctattgtgatcctttgatttcaaaattttatctttgttcaggatgtgcttgtactttcctttcattgatgttgtttcacgtgcactgg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48056886 |
tgtctagccaagctattgtgatcctttgatttcaaaattttatatttgttcaggatgtgcttgtactttcctttcattgatgttgtttcacgtgcactgg |
48056787 |
T |
|
| Q |
120 |
agactgaaatcaataaatgagagagaagtttgttgcatcatgatctcaagtaaaaactccaccaacatcgactcagttatttgttggtttgtaaaacatt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48056786 |
agactgaaatcaataaatgagagagaagtttgttgcatcatgatctcaagtaaaaactccaccaacatcgactcagttatttgttggtttgtaaaacatt |
48056687 |
T |
|
| Q |
220 |
ctaacgcaaagaactgaagctctcaacttctgcccta |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48056686 |
ctaacgcaaagaactgaagctctcaacttctgcccta |
48056650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 97 - 258
Target Start/End: Complemental strand, 48043591 - 48043430
Alignment:
| Q |
97 |
tgatgttgtttcacgtgcactggagactgaaatcaataaatgagagagaagtttgttgcatcatgatctcaagtaaaaactccaccaacatcgactcagt |
196 |
Q |
| |
|
|||||||||||||| || | || ||||||||||||| |||| ||| |||||||||| ||||||||||||| |||||||||||| |||||| |||||||| |
|
|
| T |
48043591 |
tgatgttgtttcacatgagcaggggactgaaatcaatcaatgggagggaagtttgttacatcatgatctcatgtaaaaactccaacaacattgactcagt |
48043492 |
T |
|
| Q |
197 |
tatttgttggtttgtaaaacattctaacgcaaagaactgaagctctcaacttctgccctatg |
258 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| |||| |
|
|
| T |
48043491 |
aatttgtcggtttgtaaaacattctaaagcaaacaactgaagctctcaacttctgccatatg |
48043430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 121 - 255
Target Start/End: Complemental strand, 48037523 - 48037384
Alignment:
| Q |
121 |
gactgaaatcaataaatgagagagaagtttgttgcatcatgatctcaagtaaaaactccaccaacatc----gactcagttatttgttggtttgtaaaac |
216 |
Q |
| |
|
||||| |||| || ||||| ||||||||||||||| ||||||||||| ||||||||| ||||||||| |||||||||||| |||| |||||||| | |
|
|
| T |
48037523 |
gactggaatccatcaatgaaagagaagtttgttgcttcatgatctcatgtaaaaacttcaccaacattaattgactcagttattagttgatttgtaaagc |
48037424 |
T |
|
| Q |
217 |
attctaacgcaaagaactgaagctctc-aacttctgccct |
255 |
Q |
| |
|
||||||| |||||||||| |||||||| |||||||||||| |
|
|
| T |
48037423 |
attctaaagcaaagaacttaagctctcaaacttctgccct |
48037384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 36 - 166
Target Start/End: Complemental strand, 48051619 - 48051488
Alignment:
| Q |
36 |
tgtgatcctttgatttcaaaattttatctttgt-tcaggatgtgcttgtactttcctttcat-tgatgttgtttcacgtgcactggagactgaaatcaat |
133 |
Q |
| |
|
||||||||| |||||||||| ||||| |||| |||||||||| |||||| |||||||| |||||||||||||| || | || ||||||||||||| |
|
|
| T |
48051619 |
tgtgatcctatgatttcaaa-ttttagcttttaatcaggatgtgtccgtacttgcctttcatatgatgttgtttcacatgtgcaggggactgaaatcaat |
48051521 |
T |
|
| Q |
134 |
aaatgagagagaagtttgttgcatcatgatctc |
166 |
Q |
| |
|
| ||| || |||||||||| |||||||||||| |
|
|
| T |
48051520 |
atatgggaaggaagtttgttacatcatgatctc |
48051488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 199
Target Start/End: Complemental strand, 48051474 - 48051419
Alignment:
| Q |
144 |
gaagtttgttgcatcatgatctcaagtaaaaactccaccaacatcgactcagttat |
199 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||| |||||| ||||||||||| |
|
|
| T |
48051474 |
gaagtttgttacatcatgatctcgtgtaaaaactccaacaacatggactcagttat |
48051419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 66
Target Start/End: Complemental strand, 48045460 - 48045418
Alignment:
| Q |
24 |
tagccaagctattgtgatcctttgatttcaaaattttatcttt |
66 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
48045460 |
tagccaagctattgtgatcctttgatttctaaattttagcttt |
48045418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 219
Target Start/End: Complemental strand, 48045351 - 48045275
Alignment:
| Q |
143 |
agaagtttgttgcatcatgatctcaagtaaaaactccaccaacatcgactcagttatttgttggtttgtaaaacatt |
219 |
Q |
| |
|
|||||||| |||| ||| | ||||| ||||||||| ||||||||| | ||||||||| |||| ||||||||||||| |
|
|
| T |
48045351 |
agaagtttattgcttcacggtctcatgtaaaaactacaccaacattggctcagttatgcgttgctttgtaaaacatt |
48045275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 123 - 200
Target Start/End: Complemental strand, 5317164 - 5317087
Alignment:
| Q |
123 |
ctgaaatcaataaatgagagagaagtttgttgcatcatgatctcaagtaaaaactccaccaacatcgactcagttatt |
200 |
Q |
| |
|
||||||||||| | ||| ||||||||||||||| ||||||||||| | |||||||| |||||||||||||| |||||| |
|
|
| T |
5317164 |
ctgaaatcaattactgatagagaagtttgttgcttcatgatctcatgcaaaaactcaaccaacatcgactctgttatt |
5317087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 236
Target Start/End: Original strand, 9262577 - 9262690
Alignment:
| Q |
123 |
ctgaaatcaataaatgagagagaagtttgttgcatcatgatctcaagtaaaaactccaccaacatcgactcagttatttgttggtttgtaaaacattcta |
222 |
Q |
| |
|
||||||||||| | ||| |||||| |||||||| |||||||||| | |||||||| |||||||||||||| |||||| ||| |||| || ||||| | |
|
|
| T |
9262577 |
ctgaaatcaattactgatagagaaatttgttgcttcatgatctcgtgcaaaaactcaaccaacatcgactctgttattgactggcttgtgaagcattcca |
9262676 |
T |
|
| Q |
223 |
acgcaaagaactga |
236 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
9262677 |
aatcaaagaactga |
9262690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University