View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10628_low_9 (Length: 264)
Name: NF10628_low_9
Description: NF10628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10628_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 1373385 - 1373140
Alignment:
| Q |
1 |
acaagtgaaggtttgatggcagacaacgatggatcccaacagcaagactatgtgtaagcagactggtttatttttgaacaagggaagaataactgaatga |
100 |
Q |
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| T |
1373385 |
acaagtgaaggtttgatggcagacaacgatggatcccaacagcaagactatgtgtaagcagactggtttatttttgaacaagggaagaataactgaatga |
1373286 |
T |
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| Q |
101 |
gtattctaatctatatattatagttgacttgatagcttgaaaataaagtcttatttggaaagatttcaacctatactgaaattgctctttatattatttg |
200 |
Q |
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| T |
1373285 |
gtattctaatctatatattatagttgacttgatagcttgaaaataaagtcttatttggaaagatttcaacctatactgaaattgatctttatattatttg |
1373186 |
T |
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| Q |
201 |
ataaatggtatttctttcaactcatatcagttgtaggcattgtaac |
246 |
Q |
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| T |
1373185 |
ataaatggtctttctttcaactcatatcagttgtaggcaatgtaac |
1373140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 2 - 240
Target Start/End: Complemental strand, 1385199 - 1384959
Alignment:
| Q |
2 |
caagtgaaggtttgatggcagacaacgatggatcccaacagcaagactatgtgtaagcagactggtttatttttgaacaag--ggaagaataactgaatg |
99 |
Q |
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| T |
1385199 |
caagtgaaggtttgacggcagacaataatggatcccaacagcaagatactgtgtaagttgactccctcaattttgaacaagagggtagaaaaactgaatt |
1385100 |
T |
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| Q |
100 |
agtattctaatctatatattatagttgacttgatagcttgaaaataaagtcttatttggaaagatttcaacctatactgaaattgctctttatattattt |
199 |
Q |
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| T |
1385099 |
agtactctaatctgtatattatggttgacttgatggcttgaagataaagccttatttggaaagatttcaacctatactgaaactgtcttttatgtaattt |
1385000 |
T |
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| Q |
200 |
gataaatggtatttctttcaactcatatcagttgtaggcat |
240 |
Q |
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| T |
1384999 |
gataaatggtcttcctttcaacttatgttagttgtaggcat |
1384959 |
T |
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