View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10629_10 (Length: 315)
Name: NF10629_10
Description: NF10629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10629_10 |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 30 - 294
Target Start/End: Original strand, 44575294 - 44575558
Alignment:
| Q |
30 |
ccccaaacctcaccctcatgagctatcattgcttcttgcaattaacacaaaccaataataattctatttctttgatggattttgttgtatgtcctaactt |
129 |
Q |
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| T |
44575294 |
ccccaaacctcaccctcatgagctatcattgcttcttgcaattaacacaaaccaataataattctatttctttgatggattttgttgtatgtcctaactt |
44575393 |
T |
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| Q |
130 |
aaaaataaagtatctccatttctctggcaattattggttaagaactcaacacttcaaaatgttctcttccatttttcccaatttgcaattacttgatttg |
229 |
Q |
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| T |
44575394 |
aaaaataaagtatctccatttgtctggcaattattggttaagaactcaacacttcaaaatgttctcttccatttttcccaatttgcaattacttgatttg |
44575493 |
T |
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| Q |
230 |
agcttttgctattacatatccatagaagatatttgtgaatttgtcaaaaacaagagttgatgatg |
294 |
Q |
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| T |
44575494 |
agcttttgctattacatatccatagaagatatttgtgaatttgtcaaaaacaagagttgatgatg |
44575558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 135 - 271
Target Start/End: Original strand, 32785575 - 32785711
Alignment:
| Q |
135 |
taaagtatctccatttctctggcaattattggttaagaactcaacacttcaaaatgttctcttccatttttcccaatttgcaattacttgatttgagctt |
234 |
Q |
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| T |
32785575 |
taaagtttctccatttggctcgcaattattggttaagagatgaaagcatcaggatgttttcttctattttttccaatttgcaactacttgatttgagcta |
32785674 |
T |
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| Q |
235 |
ttgctattacatatccatagaagatatttgtgaattt |
271 |
Q |
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| T |
32785675 |
ttgctataacatatctgaagaaggtatttgtcaattt |
32785711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 268
Target Start/End: Original strand, 1037524 - 1037597
Alignment:
| Q |
195 |
cttccatttttcccaatttgcaattacttgatttgagcttttgctattacatatccatagaagatatttgtgaa |
268 |
Q |
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| T |
1037524 |
cttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaa |
1037597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 249
Target Start/End: Original strand, 12121317 - 12121371
Alignment:
| Q |
195 |
cttccatttttcccaatttgcaattacttgatttgagcttttgctattacatatc |
249 |
Q |
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| T |
12121317 |
cttccgttttccccaatttgcaattgcttgatttgagtttttgctataacatatc |
12121371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 268
Target Start/End: Original strand, 55908588 - 55908661
Alignment:
| Q |
195 |
cttccatttttcccaatttgcaattacttgatttgagcttttgctattacatatccatagaagatatttgtgaa |
268 |
Q |
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| T |
55908588 |
cttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaa |
55908661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 233
Target Start/End: Original strand, 18315121 - 18315171
Alignment:
| Q |
183 |
tcaaaatgttctcttccatttttcccaatttgcaattacttgatttgagct |
233 |
Q |
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| T |
18315121 |
tcaaaatattttcttccattttccccaatttgcagttgcttgatttgagct |
18315171 |
T |
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