View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1062_low_2 (Length: 675)

Name: NF1062_low_2
Description: NF1062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1062_low_2
NF1062_low_2
[»] chr5 (14 HSPs)
chr5 (56-665)||(37195803-37196412)
chr5 (230-432)||(37226985-37227187)
chr5 (230-432)||(37221512-37221714)
chr5 (352-432)||(37207539-37207619)
chr5 (230-432)||(37201011-37201213)
chr5 (573-623)||(37440376-37440426)
chr5 (573-626)||(37221318-37221371)
chr5 (573-626)||(37226791-37226844)
chr5 (230-432)||(37386765-37386967)
chr5 (229-310)||(37440682-37440763)
chr5 (29-70)||(37196435-37196476)
chr5 (573-624)||(37387090-37387141)
chr5 (360-432)||(37309115-37309187)
chr5 (345-432)||(37440556-37440643)
[»] chr3 (1 HSPs)
chr3 (404-466)||(36193096-36193158)
[»] chr2 (1 HSPs)
chr2 (371-430)||(8739507-8739566)


Alignment Details
Target: chr5 (Bit Score: 598; Significance: 0; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 56 - 665
Target Start/End: Complemental strand, 37196412 - 37195803
Alignment:
Q  56 aaaaaccatgattctatataaattcacaaaaatcaaaagtaaaatagcaaatacctattaccctttaaccaatttaatacatactataagaaaatcaatc 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37196412 aaaaaccatgattctatataaattcacaaaaatcaaaagtaaaatagcaaatacctattaccctttaaccaatttaatacatactataagaaaatcaatc 37196313  T
Q  156 tcacagtatgtacaaaaacataatgaattgatatcaaaagaccaaaacatatatagaagcaaaaataagaaagtacctttcccaggaatataaaccaaac 255  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37196312 tcacagtatgtacaaaaacatcatgaattgatatcaaaagaccaaaacatatatagaagcaaaaataagaaagtacctttcccaggaatataaaccaaac 37196213  T
Q  256 cactcccttgactaaaattcacaccagggttatacttttgcagcaactcagcatcaatttcagtcttattagaaatcaattccaaagaatcctcaggtct 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37196212 cactcccttgactaaaattcacaccagggttatacttttgcagcaactcagcatcaatttcagtcttattagaaatcaattccaaagaatcctcaggtct 37196113  T
Q  356 aagaggatatgtaataaacaaaccataatccttggaaacatcactgttcccacaagaacaattaacagtaacattaagagttccagtatcaggaatatca 455  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  37196112 aagaggatatgtaataaacaaaccataatccttggaaacatcactgttcccacatgaacaattaacagtaacattaagagttccagtatcaggaatatca 37196013  T
Q  456 tttgatggatagctattgaaattttgcaaccattcagaagtagtcaaattggaatagttgttactagcaacagataaataagtatcttttgtagcaactt 555  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  37196012 tttgatggatagctattgaaattttgcaaccattcagaagtagtcaaattggaataattgttactagcaacagataaataagtatcttttgtagcaactt 37195913  T
Q  556 ggtattgaaatatatggccaagaaactcatcatggatgcaatcacaagggaatggaacattcactcttgtaaaagattggacaaaatctttgtttgttat 655  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37195912 ggtattgaaatatatggccaagaaactcatcatggatgcaatcacaagggaatggaacattcactcttgtaaaagattggacaaaatctttgtttgttat 37195813  T
Q  656 tgtgtctgtg 665  Q
    ||||||||||    
T  37195812 tgtgtctgtg 37195803  T

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Target: chr5; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 230 - 432
Target Start/End: Complemental strand, 37227187 - 37226985
Alignment:
Q  230 acctttcccaggaatataaaccaaaccactcccttgactaaaattcacaccagggttatacttttgcagcaactcagcatcaatttcagtcttattagaa 329  Q
    ||||||||| ||||||||||| | ||| || ||||| || ||||| ||||||||||| ||| | |||||||||||| | | ||  |  || |  |||| |    
T  37227187 acctttccctggaatataaacaagaccccttccttggctgaaattgacaccagggttgtacctctgcagcaactcacccttaaccttggtatacttagca 37227088  T
Q  330 atcaattccaaagaatcctcaggtctaagaggatatgtaataaacaaaccataatccttggaaacatcactgttcccacaagaacaattaacagtaacat 429  Q
    ||  |||||||||  || ||||||||||||||||||||||| |||||||||||||| || ||||| || | ||||||||| |||||||||||||| ||||    
T  37227087 atggattccaaagtgtcgtcaggtctaagaggatatgtaatgaacaaaccataatcttttgaaacctctccgttcccacaggaacaattaacagtgacat 37226988  T
Q  430 taa 432  Q
    |||    
T  37226987 taa 37226985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 230 - 432
Target Start/End: Complemental strand, 37221714 - 37221512
Alignment:
Q  230 acctttcccaggaatataaaccaaaccactcccttgactaaaattcacaccagggttatacttttgcagcaactcagcatcaatttcagtcttattagaa 329  Q
    ||||||||| |||||| |||| | |||||| ||||| || ||||| ||||||||||| ||| | |||||||||||||| |||||    || |  ||||||    
T  37221714 acctttccctggaataaaaacaagaccacttccttggctgaaattgacaccagggttgtacctctgcagcaactcagcctcaatcatggtatccttagaa 37221615  T
Q  330 atcaattccaaagaatcctcaggtctaagaggatatgtaataaacaaaccataatccttggaaacatcactgttcccacaagaacaattaacagtaacat 429  Q
    ||  | |||||||  |||| ||  |||||||| ||||| || ||||||||||||||||| ||||| || ||| ||||||| ||||| |||||||||||||    
T  37221614 atagactccaaagtgtccttagaactaagagggtatgtgatgaacaaaccataatccttagaaacctctctgctcccacaggaacagttaacagtaacat 37221515  T
Q  430 taa 432  Q
    |||    
T  37221514 taa 37221512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 352 - 432
Target Start/End: Complemental strand, 37207619 - 37207539
Alignment:
Q  352 gtctaagaggatatgtaataaacaaaccataatccttggaaacatcactgttcccacaagaacaattaacagtaacattaa 432  Q
    ||||||| |||||||| || ||||||||||||||||||||||| || ||||||||||| ||||| |||| |||||||||||    
T  37207619 gtctaagtggatatgtgatgaacaaaccataatccttggaaacctctctgttcccacaggaacagttaatagtaacattaa 37207539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 230 - 432
Target Start/End: Complemental strand, 37201213 - 37201011
Alignment:
Q  230 acctttcccaggaatataaaccaaaccactcccttgactaaaattcacaccagggttatacttttgcagcaactcagcatcaatttcagtcttattagaa 329  Q
    ||||||||| |||||| |||| | |||||| ||||  || ||||| ||||||||||| ||| | |||||||||||||| ||||| || |     |||| |    
T  37201213 acctttccctggaataaaaacaagaccacttcctttgctgaaattaacaccagggttgtacctctgcagcaactcagcctcaatctctgcacccttagca 37201114  T
Q  330 atcaattccaaagaatcctcaggtctaagaggatatgtaataaacaaaccataatccttggaaacatcactgttcccacaagaacaattaacagtaacat 429  Q
    ||  | |||||||  ||||||  |||||| |||||||| || ||||| ||||||||| | ||||| ||  | |||||||||||||||||||||||||| |    
T  37201113 atagactccaaagtgtcctcacttctaagtggatatgtgatgaacaatccataatccatagaaacctctttattcccacaagaacaattaacagtaactt 37201014  T
Q  430 taa 432  Q
    |||    
T  37201013 taa 37201011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 573 - 623
Target Start/End: Complemental strand, 37440426 - 37440376
Alignment:
Q  573 ccaagaaactcatcatggatgcaatcacaagggaatggaacattcactctt 623  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  37440426 ccaagaaactcatcattgatgcaatcacaagggaatggaacattcactctt 37440376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 573 - 626
Target Start/End: Complemental strand, 37221371 - 37221318
Alignment:
Q  573 ccaagaaactcatcatggatgcaatcacaagggaatggaacattcactcttgta 626  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  37221371 ccaagaaactcatcattgatgcaatcacaagggaagggaacattcactcttgta 37221318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 573 - 626
Target Start/End: Complemental strand, 37226844 - 37226791
Alignment:
Q  573 ccaagaaactcatcatggatgcaatcacaagggaatggaacattcactcttgta 626  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  37226844 ccaagaaactcatcattgatgcaatcacaagggaatggaacattcaatcttgta 37226791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 230 - 432
Target Start/End: Original strand, 37386765 - 37386967
Alignment:
Q  230 acctttcccaggaatataaaccaaaccactcccttgactaaaattcacaccagggttatacttttgcagcaactcagcatcaatttcagtcttattagaa 329  Q
    ||||||||| |||||| ||||||  ||||| ||||  || ||||||||||||||||| ||||| || ||||||||||  | || ||  || |  || | |    
T  37386765 acctttccctggaataaaaaccagcccacttcctttgctgaaattcacaccagggttgtacttctgtagcaactcaggcttaacttttgtatgcttcgca 37386864  T
Q  330 atcaattccaaagaatcctcaggtctaagaggatatgtaataaacaaaccataatccttggaaacatcactgttcccacaagaacaattaacagtaacat 429  Q
    ||  | |||||||  |||||||  |||||||||||||| || |||||||||||||||||||||||     |||  ||||| ||||| |||||||||||||    
T  37386865 atggactccaaagtgtcctcagaactaagaggatatgttatgaacaaaccataatccttggaaaccattttgtctccacaggaacagttaacagtaacat 37386964  T
Q  430 taa 432  Q
    |||    
T  37386965 taa 37386967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 229 - 310
Target Start/End: Complemental strand, 37440763 - 37440682
Alignment:
Q  229 tacctttcccaggaatataaaccaaaccactcccttgactaaaattcacaccagggttatacttttgcagcaactcagcatc 310  Q
    |||||||||| |||||| |||||| |||||| ||||| || ||||||||||| ||||| ||| | |||||||||||||||||    
T  37440763 tacctttccctggaataaaaaccagaccacttccttggctgaaattcacacctgggttgtacctctgcagcaactcagcatc 37440682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 37196476 - 37196435
Alignment:
Q  29 aaaatacacttaaattttgtccttttcaaaaaccatgattct 70  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  37196476 aaaatacacttaagttttgtccttttcaaaaaccatgattct 37196435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 573 - 624
Target Start/End: Original strand, 37387090 - 37387141
Alignment:
Q  573 ccaagaaactcatcatggatgcaatcacaagggaatggaacattcactcttg 624  Q
    ||||||||||| ||||  |||||||||||||||||||||||||||| |||||    
T  37387090 ccaagaaactcgtcattaatgcaatcacaagggaatggaacattcagtcttg 37387141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 360 - 432
Target Start/End: Complemental strand, 37309187 - 37309115
Alignment:
Q  360 ggatatgtaataaacaaaccataatccttggaaacatcactgttcccacaagaacaattaacagtaacattaa 432  Q
    ||||| ||||||||||| |||||||| || ||||  |  |||||||||||||||||||| ||||| |||||||    
T  37309187 ggataggtaataaacaagccataatcttttgaaatctggctgttcccacaagaacaattgacagttacattaa 37309115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 345 - 432
Target Start/End: Complemental strand, 37440643 - 37440556
Alignment:
Q  345 tcctcaggtctaagaggatatgtaataaacaaaccataatccttggaaacatcactgttcccacaagaacaattaacagtaacattaa 432  Q
    |||||||  |||||||||||||| |  |||||||||||||||||||||||    || |  ||||| ||||| ||||||||||||||||    
T  37440643 tcctcagaactaagaggatatgttacgaacaaaccataatccttggaaaccagtctttctccacaggaacagttaacagtaacattaa 37440556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 404 - 466
Target Start/End: Complemental strand, 36193158 - 36193096
Alignment:
Q  404 cccacaagaacaattaacagtaacattaagagttccagtatcaggaatatcatttgatggata 466  Q
    ||||||||||||||||||||||||||| |  ||||||||||||||||||||||| | ||||||    
T  36193158 cccacaagaacaattaacagtaacattcaacgttccagtatcaggaatatcattcggtggata 36193096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 371 - 430
Target Start/End: Original strand, 8739507 - 8739566
Alignment:
Q  371 aaacaaaccataatccttggaaacatcactgttcccacaagaacaattaacagtaacatt 430  Q
    |||||| ||||||||||| |||||||| || |  |||||||||||||| |||||||||||    
T  8739507 aaacaacccataatcctttgaaacatctctatcaccacaagaacaatttacagtaacatt 8739566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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