View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1062_low_4 (Length: 498)

Name: NF1062_low_4
Description: NF1062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1062_low_4
NF1062_low_4
[»] chr5 (9 HSPs)
chr5 (16-402)||(16800774-16801160)
chr5 (338-403)||(21238750-21238816)
chr5 (334-395)||(29964155-29964215)
chr5 (334-395)||(30010583-30010643)
chr5 (340-395)||(16497729-16497784)
chr5 (330-403)||(19223054-19223128)
chr5 (330-395)||(33892824-33892890)
chr5 (335-395)||(2675062-2675122)
chr5 (332-403)||(34909636-34909708)
[»] chr6 (6 HSPs)
chr6 (330-395)||(31996230-31996295)
chr6 (330-395)||(21199607-21199672)
chr6 (325-403)||(8779558-8779637)
chr6 (329-395)||(21010858-21010924)
chr6 (262-380)||(12029043-12029156)
chr6 (330-369)||(7835355-7835394)
[»] chr2 (16 HSPs)
chr2 (330-395)||(13898529-13898594)
chr2 (330-395)||(14039146-14039211)
chr2 (330-395)||(19948591-19948656)
chr2 (330-403)||(38413437-38413511)
chr2 (332-403)||(3991817-3991889)
chr2 (330-403)||(41978881-41978955)
chr2 (330-395)||(43318744-43318809)
chr2 (333-403)||(33262897-33262968)
chr2 (289-403)||(24025892-24026007)
chr2 (331-395)||(37810867-37810931)
chr2 (340-403)||(45161126-45161190)
chr2 (165-300)||(28545913-28546046)
chr2 (351-403)||(35404323-35404376)
chr2 (328-392)||(38295698-38295763)
chr2 (333-389)||(2103530-2103586)
chr2 (339-379)||(11153342-11153382)
[»] chr8 (3 HSPs)
chr8 (331-395)||(33177831-33177895)
chr8 (337-387)||(4871099-4871149)
chr8 (339-402)||(12522425-12522489)
[»] chr7 (10 HSPs)
chr7 (343-395)||(6268554-6268606)
chr7 (332-403)||(19594254-19594326)
chr7 (330-395)||(14732277-14732342)
chr7 (330-395)||(34656658-34656723)
chr7 (339-403)||(21024110-21024175)
chr7 (338-395)||(35313610-35313667)
chr7 (338-395)||(38910534-38910591)
chr7 (321-395)||(1254440-1254515)
chr7 (325-369)||(37392610-37392654)
chr7 (325-392)||(48136862-48136930)
[»] chr3 (14 HSPs)
chr3 (330-397)||(29690682-29690749)
chr3 (330-395)||(9818547-9818612)
chr3 (330-395)||(49293856-49293921)
chr3 (339-395)||(37832625-37832681)
chr3 (326-380)||(30238473-30238528)
chr3 (330-376)||(47467394-47467440)
chr3 (330-395)||(40064331-40064396)
chr3 (325-392)||(33693312-33693380)
chr3 (325-387)||(19386869-19386930)
chr3 (247-300)||(2118337-2118390)
chr3 (338-395)||(27261446-27261503)
chr3 (331-367)||(2118430-2118466)
chr3 (325-403)||(16155208-16155288)
chr3 (325-403)||(50902938-50903018)
[»] chr4 (15 HSPs)
chr4 (330-403)||(54561263-54561337)
chr4 (331-395)||(26448684-26448748)
chr4 (330-403)||(51967321-51967395)
chr4 (340-403)||(9972817-9972881)
chr4 (330-403)||(8563342-8563417)
chr4 (325-403)||(29966374-29966453)
chr4 (338-395)||(6487311-6487368)
chr4 (330-395)||(23170716-23170781)
chr4 (325-392)||(50517249-50517317)
chr4 (330-369)||(41470320-41470359)
chr4 (334-396)||(21306294-21306356)
chr4 (338-403)||(40162833-40162898)
chr4 (339-403)||(26491117-26491182)
chr4 (331-403)||(56423961-56424034)
chr4 (325-403)||(28484389-28484469)
[»] chr1 (8 HSPs)
chr1 (330-403)||(33886842-33886916)
chr1 (330-403)||(33957334-33957408)
chr1 (330-402)||(42638016-42638088)
chr1 (330-403)||(34751554-34751628)
chr1 (330-395)||(34019193-34019258)
chr1 (330-403)||(1108417-1108491)
chr1 (340-403)||(7798565-7798629)
chr1 (325-403)||(42304476-42304556)
[»] scaffold0421 (1 HSPs)
scaffold0421 (330-395)||(1752-1817)
[»] scaffold0246 (1 HSPs)
scaffold0246 (330-403)||(1411-1486)


Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 16 - 402
Target Start/End: Complemental strand, 16801160 - 16800774
Alignment:
Q  16 ataaagttatggtcaacttaacaacaaaatataaaattaacttcataagttttttaagattctaacatgcgtcataatcttcaacgtcagaataatttgc 115  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16801160 ataaaattatggtcaacttaacaacaaaatacaaaattaacttcataagttttttaagattctaacatgcgtcataatcttcaacgtcagaataatttgc 16801061  T
Q  116 caccactacaaccttaactgttgtgtgtttccgtgttcgtcttttgagaactcagagaagagaataacgttttagaatttcagaagaagtcaagtaatgt 215  Q
    |||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  16801060 caccaccacaaccttaactgttgtgtgtttccgtgttcgtcgtttcagaactcagagaagagtataacgttttagaatttcagaagaagtcaggtaatgt 16800961  T
Q  216 gttattttaattgcaatgacaacgtttcactaccttggacttcaagaaagaattgggttttgcaagaaaatgggcccaaaataaatgaaatgttttattt 315  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16800960 gttattttaattgcaatgacaacgtttcagtaccttggacttcaagaaagaattgggttttgcaagaaaatgggcccaaaataaatgaaatgttttattt 16800861  T
Q  316 aacggaaattcggtcgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaaccgagtt 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16800860 aacggaaattcggtcgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaaccgagtt 16800774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 338 - 403
Target Start/End: Original strand, 21238750 - 21238816
Alignment:
Q  338 ccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 403  Q
    |||||||||||||||||||| ||||||||||||||||||| |||  |||| ||| ||||||||||||    
T  21238750 ccgagtttaacatgtgttaactcggtcaaactcgtcaaactttccgattttaccaaaaaccgagttt 21238816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 334 - 395
Target Start/End: Complemental strand, 29964215 - 29964155
Alignment:
Q  334 tttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 395  Q
    |||||||| ||||||||||||||| | ||||||||| ||||||||||| |||||||||||||    
T  29964215 tttaccgaatttaacatgtgttaacttggtcaaacttgtcaaacattc-aatttcaccaaaa 29964155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 334 - 395
Target Start/End: Original strand, 30010583 - 30010643
Alignment:
Q  334 tttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 395  Q
    |||||||| ||||||||||||||| | ||||||||| ||||||||||| |||||||||||||    
T  30010583 tttaccgaatttaacatgtgttaacttggtcaaacttgtcaaacattc-aatttcaccaaaa 30010643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 340 - 395
Target Start/End: Original strand, 16497729 - 16497784
Alignment:
Q  340 gagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 395  Q
    ||||||||||  ||||||||||||||||||||||||||||||  |||||| |||||    
T  16497729 gagtttaacacatgttaagtcggtcaaactcgtcaaacattccgatttcagcaaaa 16497784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 403
Target Start/End: Complemental strand, 19223128 - 19223054
Alignment:
Q  330 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 403  Q
    ||||||| |||||||||||| ||||||| ||||| | ||||||||||| |||  |||||||| ||||||||||||    
T  19223128 cgagttttccgagtttaacacgtgttaactcggttacactcgtcaaactttccgatttcaccaaaaaccgagttt 19223054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 395
Target Start/End: Original strand, 33892824 - 33892890
Alignment:
Q  330 cgagtttac-cgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 395  Q
    ||||||||| ||||||||||| ||||||| ||||||||||||||||||| |||  |||||| |||||    
T  33892824 cgagtttacacgagtttaacacgtgttaactcggtcaaactcgtcaaactttccgatttcatcaaaa 33892890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 395
Target Start/End: Original strand, 2675062 - 2675122
Alignment:
Q  335 ttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 395  Q
    ||||||| ||||||| ||||||| ||||||||||||||||||| ||   ||||||||||||    
T  2675062 ttaccgattttaacacgtgttaactcggtcaaactcgtcaaacttttcgatttcaccaaaa 2675122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 332 - 403
Target Start/End: Complemental strand, 34909708 - 34909636
Alignment:
Q  332 agtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaa-accgagttt 403  Q
    |||||||||||||||||| | ||| | |||||||||||| |||||| |||  ||||||||||| |||||||||    
T  34909708 agtttaccgagtttaacacgcgttcactcggtcaaactcctcaaactttccgatttcaccaaagaccgagttt 34909636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 330 - 395
Target Start/End: Original strand, 31996230 - 31996295
Alignment:
Q  330 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 395  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||| |||  ||||||||||||    
T  31996230 cgagtttaccgagtttaacacgtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaa 31996295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 330 - 395
Target Start/End: Complemental strand, 21199672 - 21199607
Alignment:
Q  330 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 395  Q
    ||||||||||||||||||||  |||||| ||||||||||||||||||| |||  ||||||||||||    
T  21199672 cgagtttaccgagtttaacacatgttaactcggtcaaactcgtcaaactttccgatttcaccaaaa 21199607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 325 - 403
Target Start/End: Original strand, 8779558 - 8779637
Alignment:
Q  325 tcggtcgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 403  Q
    |||| |||||||||||||||||||| | ||||| | ||||||||||||||||| |||  |||||||| ||||||||||||    
T  8779558 tcggacgagtttaccgagtttaacacgagttaacttggtcaaactcgtcaaactttccgatttcaccaaaaaccgagttt 8779637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 395
Target Start/End: Original strand, 21010858 - 21010924
Alignment:
Q  329 tcgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 395  Q
    ||||||||| ||||||| ||| || |||| ||||| |||||||||||||||| | ||||||||||||    
T  21010858 tcgagtttaacgagttttacacgtattaactcggttaaactcgtcaaacattttgatttcaccaaaa 21010924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 262 - 380
Target Start/End: Complemental strand, 12029156 - 12029043
Alignment:
Q  262 aaagaattgggttttgcaagaaaatgggcccaaaataaatgaaatgttttatttaacggaaattcggtcgagtttac-cgagtttaacatgtgttaagtc 360  Q
    ||||||||| |||||| ||||||||||  ||||||      ||||||||  || |||| ||| |||||||||||||| ||||||||| | ||||||| |     
T  12029156 aaagaattgagttttgaaagaaaatggatccaaaa------aaatgtttctttaaacgtaaactcggtcgagtttacacgagtttaatacgtgttaacta 12029063  T
Q  361 ggtcaaactcgtcaaacatt 380  Q
     |||||||||||||||||||    
T  12029062 tgtcaaactcgtcaaacatt 12029043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 369
Target Start/End: Original strand, 7835355 - 7835394
Alignment:
Q  330 cgagtttaccgagtttaacatgtgttaagtcggtcaaact 369  Q
    |||||||||||||||||||| ||||||| |||||||||||    
T  7835355 cgagtttaccgagtttaacacgtgttaactcggtcaaact 7835394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 330 - 395
Target Start/End: Complemental strand, 13898594 - 13898529
Alignment:
Q  330 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 395  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||| |||  ||||||||||||    
T  13898594 cgagtttaccgagtttaacacgtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaa 13898529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 330 - 395
Target Start/End: Complemental strand, 14039211 - 14039146
Alignment:
Q  330 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 395  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||| |||  ||||||||||||    
T  14039211 cgagtttaccgagtttaacacgtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaa 14039146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 330 - 395
Target Start/End: Complemental strand, 19948656 - 19948591
Alignment:
Q  330 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 395  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||| |||  ||||||||||||    
T  19948656 cgagtttaccgagtttaacacgtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaa 19948591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 330 - 403
Target Start/End: Original strand, 38413437 - 38413511
Alignment:
Q  330 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 403  Q
    |||||||| ||||||||||| ||||||| ||||||||||||||||||| |||  |||||||| ||||||||||||    
T  38413437 cgagtttatcgagtttaacacgtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaaaccgagttt 38413511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 332 - 403
Target Start/End: Complemental strand, 3991889 - 3991817
Alignment:
Q  332 agtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 403  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||| ||   |||||||| ||||||||||||    
T  3991889 agtttaccgagtttaacacgtgttaactcggtcaaactcgtcaaacttttcgatttcaccaaaaaccgagttt 3991817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 330 - 403
Target Start/End: Complemental strand, 41978955 - 41978881
Alignment:
Q  330 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttca-ccaaaaccgagttt 403  Q
    ||||||||| |||||||||| ||||||| ||||||||||||||||||| |||  |||||| | ||||||||||||    
T  41978955 cgagtttactgagtttaacacgtgttaactcggtcaaactcgtcaaactttccgatttcatcaaaaaccgagttt 41978881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 330 - 395
Target Start/End: Original strand, 43318744 - 43318809
Alignment:
Q  330 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 395  Q
    ||||||||||||||||||||  |||||| ||||||||||||||||||| |||  |||| |||||||    
T  43318744 cgagtttaccgagtttaacacatgttaactcggtcaaactcgtcaaactttccgattttaccaaaa 43318809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 333 - 403
Target Start/End: Complemental strand, 33262968 - 33262897
Alignment:
Q  333 gtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 403  Q
    |||||||||||||| || ||||||| || |||||||||||||||| |||  |||||||| ||||||||||||    
T  33262968 gtttaccgagtttaccacgtgttaactcagtcaaactcgtcaaactttccgatttcaccaaaaaccgagttt 33262897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 403
Target Start/End: Complemental strand, 24026007 - 24025892
Alignment:
Q  289 gcccaaaataaatgaaatgttttatttaacggaaattcggtcgagtttac-cgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaattt 387  Q
    |||||||||||| ||| |||||| || || | ||| || |||||||| || ||||||||||| ||||||| || ||| || |||||||||||||| ||||    
T  24026007 gcccaaaataaaagaagtgtttt-ttaaatgtaaactcagtcgagttcacacgagtttaacacgtgttaactcagtccaattcgtcaaacattctgattt 24025909  T
Q  388 cacc-aaaaccgagttt 403  Q
     ||| ||||||||||||    
T  24025908 taccaaaaaccgagttt 24025892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 395
Target Start/End: Original strand, 37810867 - 37810931
Alignment:
Q  331 gagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 395  Q
    |||||||  |||||||||| ||||||  |||||||||||| ||||||||| | ||||||||||||    
T  37810867 gagtttattgagtttaacacgtgttagatcggtcaaactcatcaaacattatgatttcaccaaaa 37810931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 403
Target Start/End: Original strand, 45161126 - 45161190
Alignment:
Q  340 gagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 403  Q
    |||||||||| ||||||| |||||| |||||||||||| |||  |||||||| ||||||||||||    
T  45161126 gagtttaacacgtgttaactcggtcgaactcgtcaaactttccgatttcaccaaaaaccgagttt 45161190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 300
Target Start/End: Complemental strand, 28546046 - 28545913
Alignment:
Q  165 actcagagaagagaataacgttttagaatttcagaagaagtcaagt-aatgtgttattttaattgcaatgacaacgtttcactaccttggacttcaagaa 263  Q
    ||||||||||||||| ||||| | ||  ||||| |||||| ||||  || ||||||| ||||||| || |||||||||||| ||||| ||  |  || ||    
T  28546046 actcagagaagagaagaacgtgtcagtctttcaaaagaag-caagacaacgtgttatgttaattgtaaagacaacgtttcagtacctaggcttgaaaaaa 28545948  T
Q  264 agaattgggttttgcaagaaaatgggcccaaaataaa 300  Q
    |||||||||| ||| ||||||||||  ||||||||||    
T  28545947 agaattgggtattgaaagaaaatgg--ccaaaataaa 28545913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 403
Target Start/End: Original strand, 35404323 - 35404376
Alignment:
Q  351 gtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 403  Q
    ||||||| ||||||||||||||||||| ||| ||||| ||| ||||||||||||    
T  35404323 gtgttaactcggtcaaactcgtcaaactttccaattttaccaaaaaccgagttt 35404376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 392
Target Start/End: Original strand, 38295698 - 38295763
Alignment:
Q  328 gtcgagtttac-cgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacca 392  Q
    ||||||||||| |||||||| |  ||||||| ||||||||||||||||||| |||| |||| ||||    
T  38295698 gtcgagtttacacgagtttaccgagtgttaactcggtcaaactcgtcaaaccttctgattttacca 38295763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 389
Target Start/End: Complemental strand, 2103586 - 2103530
Alignment:
Q  333 gtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttca 389  Q
    ||||| |||||||| || ||||||| ||| |||||||| ||||||||||| ||||||    
T  2103586 gtttatcgagtttatcaagtgttaactcgctcaaactcatcaaacattctgatttca 2103530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 379
Target Start/End: Original strand, 11153342 - 11153382
Alignment:
Q  339 cgagtttaacatgtgttaagtcggtcaaactcgtcaaacat 379  Q
    ||||||||||| ||||||| ||||||||||||| |||||||    
T  11153342 cgagtttaacacgtgttaactcggtcaaactcgccaaacat 11153382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 331 - 395
Target Start/End: Original strand, 33177831 - 33177895
Alignment:
Q  331 gagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 395  Q
    ||||||||||||||||||| ||||||| || |||||||||||||||||||  |||||||||||||    
T  33177831 gagtttaccgagtttaacacgtgttaactcagtcaaactcgtcaaacatttcaatttcaccaaaa 33177895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 387
Target Start/End: Original strand, 4871099 - 4871149
Alignment:
Q  337 accgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaattt 387  Q
    |||||||||||||  |||||| ||||| ||||||||||||||| |||||||    
T  4871099 accgagtttaacacatgttaactcggttaaactcgtcaaacatactaattt 4871149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 402
Target Start/End: Original strand, 12522425 - 12522489
Alignment:
Q  339 cgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacca-aaaccgagtt 402  Q
    |||||||| || ||||||| ||||||||||||||||||| ||  ||||| |||| ||||||||||    
T  12522425 cgagtttaccaagtgttaactcggtcaaactcgtcaaacctttcaattttaccagaaaccgagtt 12522489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 343 - 395
Target Start/End: Complemental strand, 6268606 - 6268554
Alignment:
Q  343 tttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 395  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  6268606 tttaacacgtgttaactcggtcaaactcgtcaaacattctaatttcaccaaaa 6268554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 332 - 403
Target Start/End: Complemental strand, 19594326 - 19594254
Alignment:
Q  332 agtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 403  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||| |||  |||||||| ||||||||||||    
T  19594326 agtttaccgagtttaacacgtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaaaccgagttt 19594254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 330 - 395
Target Start/End: Original strand, 14732277 - 14732342
Alignment:
Q  330 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 395  Q
    |||||||||||||||||||| ||||| | ||||||||||||||||||| |||  ||||||||||||    
T  14732277 cgagtttaccgagtttaacacgtgttcactcggtcaaactcgtcaaactttccgatttcaccaaaa 14732342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 330 - 395
Target Start/End: Complemental strand, 34656723 - 34656658
Alignment:
Q  330 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 395  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||| ||   ||||||||||||    
T  34656723 cgagtttaccgagtttaacacgtgttaactcggtcaaactcgtcaaacttttcgatttcaccaaaa 34656658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 403
Target Start/End: Complemental strand, 21024175 - 21024110
Alignment:
Q  339 cgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 403  Q
    ||||||||||| ||||||| ||||||||||||||||||| |||  |||||||| ||||||||||||    
T  21024175 cgagtttaacacgtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaaaccgagttt 21024110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 338 - 395
Target Start/End: Complemental strand, 35313667 - 35313610
Alignment:
Q  338 ccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 395  Q
    |||||||||||| ||||||| |||||||||||| |||||| |||  ||||||||||||    
T  35313667 ccgagtttaacacgtgttaactcggtcaaactcatcaaactttccgatttcaccaaaa 35313610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 338 - 395
Target Start/End: Complemental strand, 38910591 - 38910534
Alignment:
Q  338 ccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 395  Q
    |||||||||||| ||||||| |||||||| |||||||||| |||  ||||||||||||    
T  38910591 ccgagtttaacacgtgttaactcggtcaatctcgtcaaactttccgatttcaccaaaa 38910534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 395
Target Start/End: Original strand, 1254440 - 1254515
Alignment:
Q  321 aaattcggtcgagtttaccga-gtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 395  Q
    |||||||||| | |||||| | |||||||| ||||||| |||||||||||| ||||||| ||  ||||||||||||    
T  1254440 aaattcggtcaaatttacctaagtttaacacgtgttaactcggtcaaactcatcaaacagtccgatttcaccaaaa 1254515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 369
Target Start/End: Original strand, 37392610 - 37392654
Alignment:
Q  325 tcggtcgagtttaccgagtttaacatgtgttaagtcggtcaaact 369  Q
    |||| |||||||||||||||||||| ||||||| ||| |||||||    
T  37392610 tcggacgagtttaccgagtttaacacgtgttaactcgatcaaact 37392654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 392
Target Start/End: Original strand, 48136862 - 48136930
Alignment:
Q  325 tcggtcgagtttac-cgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacca 392  Q
    |||||||||||||| ||| |||| |  ||||||| || |||||||||||||||| ||||||||| ||||    
T  48136862 tcggtcgagtttacacgaatttatcgagtgttaactcagtcaaactcgtcaaaccttctaattttacca 48136930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 330 - 397
Target Start/End: Complemental strand, 29690749 - 29690682
Alignment:
Q  330 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaacc 397  Q
    |||||||||| ||||||||| ||||||| |||||||||||||||| ||||||| ||||||| ||||||    
T  29690749 cgagtttaccaagtttaacacgtgttaactcggtcaaactcgtcatacattctgatttcacaaaaacc 29690682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 330 - 395
Target Start/End: Original strand, 9818547 - 9818612
Alignment:
Q  330 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 395  Q
    |||||||||||||||||||| ||||| | ||||||||||||||||||| |||  ||||||||||||    
T  9818547 cgagtttaccgagtttaacacgtgttcactcggtcaaactcgtcaaactttccgatttcaccaaaa 9818612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 330 - 395
Target Start/End: Complemental strand, 49293921 - 49293856
Alignment:
Q  330 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 395  Q
    |||||||||||| ||||||| ||||||| ||||||||||||||||||| |||  ||||||||||||    
T  49293921 cgagtttaccgaatttaacacgtgttaattcggtcaaactcgtcaaactttccgatttcaccaaaa 49293856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 339 - 395
Target Start/End: Complemental strand, 37832681 - 37832625
Alignment:
Q  339 cgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 395  Q
    ||||||||||| ||||||| ||||||||||||||||||| |||| ||||||||||||    
T  37832681 cgagtttaacacgtgttaactcggtcaaactcgtcaaactttctgatttcaccaaaa 37832625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 326 - 380
Target Start/End: Original strand, 30238473 - 30238528
Alignment:
Q  326 cggtcgagtttac-cgagtttaacatgtgttaagtcggtcaaactcgtcaaacatt 380  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||    
T  30238473 cggtcgagtttactcgagtttaacatgtgttaattcggtcaaactcatcaaacatt 30238528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 376
Target Start/End: Original strand, 47467394 - 47467440
Alignment:
Q  330 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaa 376  Q
    |||||||||| ||||||||| ||||||| ||||||||||||||||||    
T  47467394 cgagtttaccaagtttaacacgtgttaactcggtcaaactcgtcaaa 47467440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 330 - 395
Target Start/End: Complemental strand, 40064396 - 40064331
Alignment:
Q  330 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 395  Q
    |||||||||||||||||||| ||||||| | ||||||| ||||||||| ||   ||||||||||||    
T  40064396 cgagtttaccgagtttaacacgtgttaacttggtcaaattcgtcaaacttttcgatttcaccaaaa 40064331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 392
Target Start/End: Complemental strand, 33693380 - 33693312
Alignment:
Q  325 tcggtcgagtttac-cgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacca 392  Q
    |||||||||||||| |||||||| |  ||||||| ||||||||||||||||||| |||| |||| ||||    
T  33693380 tcggtcgagtttacacgagtttaccgagtgttaactcggtcaaactcgtcaaaccttctgattttacca 33693312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 387
Target Start/End: Original strand, 19386869 - 19386930
Alignment:
Q  325 tcggtcgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaattt 387  Q
    ||||||||||||||  ||||||||| ||||||| |||||||||||| ||| |||||| |||||    
T  19386869 tcggtcgagtttacgaagtttaacacgtgttaactcggtcaaactc-tcagacattccaattt 19386930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 300
Target Start/End: Original strand, 2118337 - 2118390
Alignment:
Q  247 accttggacttcaagaaagaattgggttttgcaagaaaatgggcccaaaataaa 300  Q
    ||||||||||| || |||||||||||||||| ||||||||   |||||||||||    
T  2118337 accttggacttgaaaaaagaattgggttttgaaagaaaataaacccaaaataaa 2118390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 395
Target Start/End: Complemental strand, 27261503 - 27261446
Alignment:
Q  338 ccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 395  Q
    |||||||||||| ||||||| || |||||| ||||||||| |||  ||||||||||||    
T  27261503 ccgagtttaacacgtgttaactcagtcaaattcgtcaaactttccgatttcaccaaaa 27261446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 331 - 367
Target Start/End: Original strand, 2118430 - 2118466
Alignment:
Q  331 gagtttaccgagtttaacatgtgttaagtcggtcaaa 367  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  2118430 gagtttaccgagtttaacacgtgttaactcggtcaaa 2118466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 403
Target Start/End: Complemental strand, 16155288 - 16155208
Alignment:
Q  325 tcggtcgagtttac-cgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttca-ccaaaaccgagttt 403  Q
    |||||||||||||| ||||||||    ||||||| ||||||||||||||||||| ||| ||||| | | ||||||||||||    
T  16155288 tcggtcgagtttacacgagtttactgagtgttaactcggtcaaactcgtcaaaccttccaattttatcaaaaaccgagttt 16155208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 403
Target Start/End: Original strand, 50902938 - 50903018
Alignment:
Q  325 tcggtcgagtttac-cgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacca-aaaccgagttt 403  Q
    |||||||||||||| |||||||| |  ||||||| || ||||||||||| |||| ||| ||||| |||| |||||||||||    
T  50902938 tcggtcgagtttacacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaaccgagttt 50903018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 330 - 403
Target Start/End: Complemental strand, 54561337 - 54561263
Alignment:
Q  330 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 403  Q
    |||||||||||||||||||| ||||||| |||||||||| |||||||| |||  |||||||| ||||||||||||    
T  54561337 cgagtttaccgagtttaacacgtgttaactcggtcaaacacgtcaaactttccgatttcaccaaaaaccgagttt 54561263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 331 - 395
Target Start/End: Complemental strand, 26448748 - 26448684
Alignment:
Q  331 gagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 395  Q
    ||||||||||||||||||  ||||||| ||||||||||||||||||| |||  ||||||||||||    
T  26448748 gagtttaccgagtttaacgcgtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaa 26448684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 330 - 403
Target Start/End: Complemental strand, 51967395 - 51967321
Alignment:
Q  330 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 403  Q
    |||||||||||| ||||||| ||||||| ||||||||||||||||||| ||   |||||||| ||||||||||||    
T  51967395 cgagtttaccgaatttaacacgtgttaactcggtcaaactcgtcaaacttttcgatttcaccaaaaaccgagttt 51967321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 403
Target Start/End: Complemental strand, 9972881 - 9972817
Alignment:
Q  340 gagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 403  Q
    |||||||||| ||||||| ||||||||||||||||||| |||  |||||||| ||||||||||||    
T  9972881 gagtttaacacgtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaaaccgagttt 9972817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 330 - 403
Target Start/End: Original strand, 8563342 - 8563417
Alignment:
Q  330 cgagtttac-cgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttca-ccaaaaccgagttt 403  Q
    ||||||||| ||||||||||| ||||||| ||||||||||||||||||| |||  |||||| | ||||||||||||    
T  8563342 cgagtttacacgagtttaacacgtgttaactcggtcaaactcgtcaaactttccgatttcatcaaaaaccgagttt 8563417  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 325 - 403
Target Start/End: Original strand, 29966374 - 29966453
Alignment:
Q  325 tcggtcgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 403  Q
    |||| ||||||||||||||||||||  |||||| ||||||||||||||| ||| ||   |||||||| ||||||||||||    
T  29966374 tcggacgagtttaccgagtttaacacatgttaactcggtcaaactcgtcgaacttttcgatttcaccaaaaaccgagttt 29966453  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 338 - 395
Target Start/End: Original strand, 6487311 - 6487368
Alignment:
Q  338 ccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 395  Q
    |||||||||||| ||||| | ||||||||||||||||||| |||  ||||||||||||    
T  6487311 ccgagtttaacacgtgttcactcggtcaaactcgtcaaactttccgatttcaccaaaa 6487368  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 330 - 395
Target Start/End: Original strand, 23170716 - 23170781
Alignment:
Q  330 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 395  Q
    |||||||| |||||||||||  |||||| ||||||||||||||||||| ||   ||||||||||||    
T  23170716 cgagtttatcgagtttaacacatgttaactcggtcaaactcgtcaaacttttcgatttcaccaaaa 23170781  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 392
Target Start/End: Complemental strand, 50517317 - 50517249
Alignment:
Q  325 tcggtcgagtttac-cgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacca 392  Q
    |||||||||||||| |||||||| |  ||||||| ||||||||||||||||||| ||| ||||| ||||    
T  50517317 tcggtcgagtttacacgagtttaccgagtgttaactcggtcaaactcgtcaaaccttccaattttacca 50517249  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 369
Target Start/End: Original strand, 41470320 - 41470359
Alignment:
Q  330 cgagtttaccgagtttaacatgtgttaagtcggtcaaact 369  Q
    |||||||||||||||||||| ||||||| |||||||||||    
T  41470320 cgagtttaccgagtttaacacgtgttaactcggtcaaact 41470359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 396
Target Start/End: Original strand, 21306294 - 21306356
Alignment:
Q  334 tttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaac 396  Q
    |||||||||||||||| ||||||| |||  |||| ||||||||| |||| ||||||| |||||    
T  21306294 tttaccgagtttaacacgtgttaactcgaccaaattcgtcaaactttctgatttcactaaaac 21306356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 403
Target Start/End: Complemental strand, 40162898 - 40162833
Alignment:
Q  338 ccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 403  Q
    ||||||||| || ||||||| ||||||||||||||||||| |||  |||||||| ||||||||||||    
T  40162898 ccgagttta-cacgtgttaactcggtcaaactcgtcaaactttccgatttcaccgaaaaccgagttt 40162833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 403
Target Start/End: Original strand, 26491117 - 26491182
Alignment:
Q  339 cgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacca-aaaccgagttt 403  Q
    |||||||| ||  |||||| ||||||||||||||||||| |||| |||| |||| |||||||||||    
T  26491117 cgagtttaccaaatgttaactcggtcaaactcgtcaaaccttctgattttaccagaaaccgagttt 26491182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 403
Target Start/End: Original strand, 56423961 - 56424034
Alignment:
Q  331 gagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcac-caaaaccgagttt 403  Q
    |||||||||||||||||||  |||||| | |||||||||| |||||| |||  |||||||  ||||||||||||    
T  56423961 gagtttaccgagtttaacacatgttaacttggtcaaactcatcaaactttccgatttcactaaaaaccgagttt 56424034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 403
Target Start/End: Complemental strand, 28484469 - 28484389
Alignment:
Q  325 tcggtcgagtttac-cgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacca-aaaccgagttt 403  Q
    |||||||||||||| |||||||| |  ||||||| || ||||||||||| |||| ||| ||||| |||| |||||||||||    
T  28484469 tcggtcgagtttacacgagtttatcgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaaccgagttt 28484389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 330 - 403
Target Start/End: Original strand, 33886842 - 33886916
Alignment:
Q  330 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 403  Q
    |||||||||||||||||||| ||||| | ||||||||||||||||||| |||  |||||||| ||||||||||||    
T  33886842 cgagtttaccgagtttaacacgtgttcactcggtcaaactcgtcaaactttccgatttcaccaaaaaccgagttt 33886916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 330 - 403
Target Start/End: Complemental strand, 33957408 - 33957334
Alignment:
Q  330 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 403  Q
    |||||||||||||||||||| ||||| | ||||||||||||||||||| |||  |||||||| ||||||||||||    
T  33957408 cgagtttaccgagtttaacacgtgttcactcggtcaaactcgtcaaactttccgatttcaccaaaaaccgagttt 33957334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 330 - 402
Target Start/End: Original strand, 42638016 - 42638088
Alignment:
Q  330 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaaccgagtt 402  Q
    |||||||||| | || ||||  ||||||||||||||||||| ||||||||||| ||||||| |||||||||||    
T  42638016 cgagtttaccaaattaaacacatgttaagtcggtcaaactcatcaaacattctgatttcacaaaaaccgagtt 42638088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 330 - 403
Target Start/End: Original strand, 34751554 - 34751628
Alignment:
Q  330 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 403  Q
    |||||||||||||||||||| ||||||| ||||||||||| | ||||| |||  |||||||| ||||||||||||    
T  34751554 cgagtttaccgagtttaacacgtgttaactcggtcaaacttggcaaactttccgatttcaccaaaaaccgagttt 34751628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 330 - 395
Target Start/End: Complemental strand, 34019258 - 34019193
Alignment:
Q  330 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 395  Q
    |||||||||||| ||||||| ||||||| |||||||| |||||||||| |||  ||||||||||||    
T  34019258 cgagtttaccgaatttaacacgtgttaactcggtcaacctcgtcaaactttccgatttcaccaaaa 34019193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 403
Target Start/End: Complemental strand, 1108491 - 1108417
Alignment:
Q  330 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 403  Q
    |||||||| ||||||||||| | ||||| || |||||||||||||||| |||  |||||||| ||||||||||||    
T  1108491 cgagtttatcgagtttaacacgcgttaactcagtcaaactcgtcaaactttccgatttcaccaaaaaccgagttt 1108417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 403
Target Start/End: Complemental strand, 7798629 - 7798565
Alignment:
Q  340 gagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 403  Q
    |||||||||| ||||| | ||||||||||||||||||| |||  |||||||| ||||||||||||    
T  7798629 gagtttaacacgtgttcactcggtcaaactcgtcaaactttccgatttcaccaaaaaccgagttt 7798565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 403
Target Start/End: Original strand, 42304476 - 42304556
Alignment:
Q  325 tcggtcgagtttac-cgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacca-aaaccgagttt 403  Q
    |||||||||||||| |||||||| |  ||||||| |||||||||||||| |||| ||| ||||| |||| |||||||||||    
T  42304476 tcggtcgagtttacacgagtttacctagtgttaactcggtcaaactcgttaaaccttccaattttaccagaaaccgagttt 42304556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0421 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0421
Description:

Target: scaffold0421; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 330 - 395
Target Start/End: Complemental strand, 1817 - 1752
Alignment:
Q  330 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 395  Q
    |||||||| | ||||||||| ||||||| ||||||||||||||||||| |||  ||||||||||||    
T  1817 cgagtttaacaagtttaacacgtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaa 1752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 403
Target Start/End: Complemental strand, 1486 - 1411
Alignment:
Q  330 cgagtttac-cgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcac-caaaaccgagttt 403  Q
    ||||||||| ||||||||||| ||||||| ||||| ||||||||||||| |||  |||||||  ||||||||||||    
T  1486 cgagtttacacgagtttaacacgtgttaactcggttaaactcgtcaaactttccgatttcactaaaaaccgagttt 1411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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