View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1062_low_9 (Length: 325)
Name: NF1062_low_9
Description: NF1062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1062_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 45 - 233
Target Start/End: Original strand, 25742874 - 25743062
Alignment:
| Q |
45 |
gctgttgctgctatgtacgttcctttaactctatccgataccgacacatacaattacattgaattatacgtacttgtgtctgtgcttcatagactctatc |
144 |
Q |
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| T |
25742874 |
gctgttgctgctatgtacgttcctttaactctatccgataccgacacatataattacattgaattatacgtacttctgtctgtgcttcatagactctatc |
25742973 |
T |
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| Q |
145 |
tattaatttatcatcatttgcaattttaattttattcaagtgtgtatgaattctttcatttgtcgaaactatgtatatgagtttatttt |
233 |
Q |
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| T |
25742974 |
tattaatttatcatcatttgcaattttaattttattcaagtgtgtatgaattctttcatttttcgaaactatgtatatgagtttatttt |
25743062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 172
Target Start/End: Original strand, 25739311 - 25739430
Alignment:
| Q |
45 |
gctgttgctgctatgtacgtt-cctttaactctatccgataccgacacatacaattacattgaattatacgtacttgtgtctgtgcttcatagactctat |
143 |
Q |
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||||||||||||||||||||| ||||||||||||||||| ||||||| ||| |||||||| | | | || ||| ||||||||||| |||||| |
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| T |
25739311 |
gctgttgctgctatgtacgttacctttaactctatccgacaccgacatatataattacatcgtgt--------cctgagtc-gtgcttcataggctctat |
25739401 |
T |
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| Q |
144 |
ctattaatttatcatcatttgcaatttta |
172 |
Q |
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| T |
25739402 |
ctattaatttatcatcatttaccatttta |
25739430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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