View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10630_low_1 (Length: 652)
Name: NF10630_low_1
Description: NF10630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10630_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 593; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 11 - 633
Target Start/End: Complemental strand, 38943215 - 38942596
Alignment:
| Q |
11 |
caaaggagaggaagggaacaacaagaaaatgaaggaggcaacattttcagtggcttcaagagggatttcttggaagatgcattgaacgtgaacaggcata |
110 |
Q |
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| T |
38943215 |
caaaggagaggaagggaacaacaagaaaatgaaggaggcaacattttcagtggcttcaagagggatttcttggaagatgcattgaacgtgaaaaggcata |
38943116 |
T |
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| Q |
111 |
tagttgaaaaacttcaaggcaggaacgaagaccaggagaagggagccattgtcaaagtggaaggaggactcagcatcatgagccctccagagagacaaca |
210 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38943115 |
tagttgaaaaacttcaaggcaggaatgaagaccaggagaagggagccattgtcaaagtggaaggaggactcagcatcatgagccctccagagagacaaca |
38943016 |
T |
|
| Q |
211 |
acgccaccccagcagacaagatgaagaagatgaagatgaagaggatgagtggaggaggccacatcatcagaaaagcagaagagaaagagaaaggcacaac |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38943015 |
acgccaccccagcagacaagatgaagaagatgaagatgaagaggatgagtggagg---ccacatcatcagaaaagcagaagagaaagagaaaggcacaac |
38942919 |
T |
|
| Q |
311 |
ggtcttgcggaaacaatttgcactgccaggcttcaccagaacatggtctcatcttcatcacctgacatctacaaccctcaagctggtagaatcaaaacta |
410 |
Q |
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| T |
38942918 |
ggtcttgcggaaacaatttgcactgccaggcttcaccagaacatggtctcatcttcatcacctgacatctacaaccctcaagctggtagaatcaaaacta |
38942819 |
T |
|
| Q |
411 |
tcaccagcttcgacctcccagctctcaggtggctaagactcagtgctgagcatggaactctccacagagtatgttttttgttttaatttgttgtccagat |
510 |
Q |
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| T |
38942818 |
tcaccagcttcgacctcccagctctcaggtggctaagactcagtgctgagcatggaactctccacagagtatgttttttgttttaatttgttgtccagat |
38942719 |
T |
|
| Q |
511 |
tcgcatcaaaattatagaaattgttcaagaattactaactctttatatgaaacagaatgctatgttcgtgccacactacaatctcaatgcaaacagcata |
610 |
Q |
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| T |
38942718 |
tcgcatcaaaattatagaaattgttcaagaattactaacgctttatatgaaacagaatgctatgttcgttccacactacaatctcaatgcaaacagcata |
38942619 |
T |
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| Q |
611 |
atattggcattgaatggacgtgc |
633 |
Q |
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| T |
38942618 |
atattggcattgaatggacgtgc |
38942596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 11 - 293
Target Start/End: Complemental strand, 38950693 - 38950408
Alignment:
| Q |
11 |
caaaggagaggaagggaacaacaagaaaatgaaggaggcaacattttcagtggcttcaagagggatttcttggaagatgcattgaacgtgaacaggcata |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38950693 |
caaaggagaggaagggaacaacaagaaaatgaaggaggcaacattttcagtggcttcaagagggatttcttggaagatgcattgaacgtgaataggcata |
38950594 |
T |
|
| Q |
111 |
tagttgaaaaacttcaaggcaggaacgaagaccaggagaagggagccattgtcaaagtggaaggaggactcagcatcatgagccctccagagagacaaca |
210 |
Q |
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||||||| | ||||||||||||||| ||||| |||||||||||||||||||||||||| ||| || |||||| | | | ||| |||||||| ||| |
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| T |
38950593 |
tagttgacagacttcaaggcaggaatgaagatgaggagaagggagccattgtcaaagtgagaggtggcctcagctttgttaccccaccagagaggcaatc |
38950494 |
T |
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| Q |
211 |
acgccaccccagcagacaagat----gaagaagatgaagatgaagaggatgagtggaggaggccacatcatcagaaaagcagaagag |
293 |
Q |
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||| || || || || || || || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38950493 |
acgtca-ccaaggaggcagcataatagaggaagatgaagatgaagaggacgagtggaggaggccacatcatcagaaaagcagaagag |
38950408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 307 - 477
Target Start/End: Complemental strand, 38950358 - 38950188
Alignment:
| Q |
307 |
caacggtcttgcggaaacaatttgcactgccaggcttcaccagaacatggtctcatcttcatcacctgacatctacaaccctcaagctggtagaatcaaa |
406 |
Q |
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||||||||||| ||||||||||||||| || || |||| ||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
38950358 |
caacggtcttgaggaaacaatttgcaccgctagacttcgccagaacattggctcatcttcatcacctgacatctacaaccctgaagctggtagaatcaaa |
38950259 |
T |
|
| Q |
407 |
actatcaccagcttcgacctcccagctctcaggtggctaagactcagtgctgagcatggaactctccacag |
477 |
Q |
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||| |||||||||| |||||||||||||| |||||||| |||||||||||||| ||||||||||||||||| |
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| T |
38950258 |
actgtcaccagctttgacctcccagctctaaggtggctcagactcagtgctgaacatggaactctccacag |
38950188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 562 - 633
Target Start/End: Complemental strand, 38950103 - 38950032
Alignment:
| Q |
562 |
acagaatgctatgttcgtgccacactacaatctcaatgcaaacagcataatattggcattgaatggacgtgc |
633 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||| |||||||| |
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| T |
38950103 |
acagaatgctatgttcgtgccacactacaatctgaatgcaaacagcgcaatatacgcattgaggggacgtgc |
38950032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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