View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10630_low_11 (Length: 240)

Name: NF10630_low_11
Description: NF10630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10630_low_11
NF10630_low_11
[»] chr1 (4 HSPs)
chr1 (1-223)||(49387736-49387955)
chr1 (1-223)||(49391024-49391243)
chr1 (54-92)||(38828993-38829031)
chr1 (38-92)||(38825784-38825835)
[»] chr6 (2 HSPs)
chr6 (1-223)||(24041775-24041994)
chr6 (12-223)||(24045082-24045290)
[»] chr7 (1 HSPs)
chr7 (1-223)||(13815477-13815696)
[»] chr2 (3 HSPs)
chr2 (126-223)||(10941499-10941595)
chr2 (126-223)||(10947368-10947464)
chr2 (126-223)||(10938142-10938238)
[»] chr4 (1 HSPs)
chr4 (57-93)||(43287617-43287653)


Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 49387955 - 49387736
Alignment:
Q  1 ttttttactcggtcaaaggcagttacactttattcataacgttcacaatttagtagtagctattattaaggctttagttttgcattacaaagatactgct 100  Q
    |||||||||  |||||| ||||||||| ||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  49387955 ttttttactaagtcaaatgcagttacattttattcataacgttcacaatttagtag---ctattattaaggctttagttttgcattacaaagatactgct 49387859  T
Q  101 agcttggaaaaatgattttcacgggaaagaaaaagaggagttaagcttttttcttttctagcctttgatttgtagcaacctaaacaactcttctctcaaa 200  Q
     |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  49387858 tgcttggaaaaatgattttcacgagaaagaaaaggaggagttaagcttttttcttttctagtctttgattagtagcaacctaaacaactcttctctcaaa 49387759  T
Q  201 tatagttttctctcctcccaaat 223  Q
    |||||||||||||||||||||||    
T  49387758 tatagttttctctcctcccaaat 49387736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 49391243 - 49391024
Alignment:
Q  1 ttttttactcggtcaaaggcagttacactttattcataacgttcacaatttagtagtagctattattaaggctttagttttgcattacaaagatactgct 100  Q
    |||||||||  |||||||| ||||||| ||||||||||||||| ||||||||||||   ||||||||||| |||||||||| |||||||||||||| |||    
T  49391243 ttttttactgagtcaaaggtagttacattttattcataacgtttacaatttagtag---ctattattaagactttagttttccattacaaagataccgct 49391147  T
Q  101 agcttggaaaaatgattttcacgggaaagaaaaagaggagttaagcttttttcttttctagcctttgatttgtagcaacctaaacaactcttctctcaaa 200  Q
     ||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  49391146 tgcttggaaaaatgattttcacaggaaagaaaaagagaagctaagcttttttcttttctagcctttgattagtagcaacctaaacaactcttttctcaaa 49391047  T
Q  201 tatagttttctctcctcccaaat 223  Q
    |||||||||||||||||||||||    
T  49391046 tatagttttctctcctcccaaat 49391024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 92
Target Start/End: Complemental strand, 38829031 - 38828993
Alignment:
Q  54 tagtagctattattaaggctttagttttgcattacaaag 92  Q
    ||||||||||||||||||||||| ||||| |||||||||    
T  38829031 tagtagctattattaaggctttatttttggattacaaag 38828993  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 92
Target Start/End: Complemental strand, 38825835 - 38825784
Alignment:
Q  38 aacgttcacaatttagtagtagctattattaaggctttagttttgcattacaaag 92  Q
    |||||||||||||||||||   || |||||||||||||| ||||| |||||||||    
T  38825835 aacgttcacaatttagtag---cttttattaaggctttatttttggattacaaag 38825784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 24041994 - 24041775
Alignment:
Q  1 ttttttactcggtcaaaggcagttacactttattcataacgttcacaatttagtagtagctattattaaggctttagttttgcattacaaagatactgct 100  Q
    |||||||||  ||||||| ||||||||||| |||||||||||||||||||||||||   ||||||||| ||||||| ||||||||||||| |||||||||    
T  24041994 ttttttactgagtcaaagacagttacacttaattcataacgttcacaatttagtag---ctattattagggctttatttttgcattacaatgatactgct 24041898  T
Q  101 agcttggaaaaatgattttcacgggaaagaaaaagaggagttaagcttttttcttttctagcctttgatttgtagcaacctaaacaactcttctctcaaa 200  Q
     |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  24041897 tgcttggaaaaatgattttcacgggaaagaaaaagaggatttaagcttttttcttttctaacctttgattagtagcaacctaaacaactcttctctcaaa 24041798  T
Q  201 tatagttttctctcctcccaaat 223  Q
    ||||||||| |||||||| ||||    
T  24041797 tatagttttttctcctccaaaat 24041775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 12 - 223
Target Start/End: Complemental strand, 24045290 - 24045082
Alignment:
Q  12 gtcaaaggcagttacactttattcataacgttcacaatttagtagtagctattattaaggctttagttttgcattacaaagatactgctagcttggaaaa 111  Q
    ||||||| |||||| |||| ||||||||| |||||||||||||||   |||||||| |||||||| ||||||||||||| ||||||||| ||||||||||    
T  24045290 gtcaaagacagttaaacttaattcataacattcacaatttagtag---ctattatttaggctttatttttgcattacaatgatactgcttgcttggaaaa 24045194  T
Q  112 atgattttcacgggaaagaaaaagaggagttaagcttttttcttttctagcctttgatttgtagcaacctaaacaactcttctctcaaatatagttttct 211  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  24045193 atgattttcacaggaaagaaaaagaggagttaagcttttttcttttctagcctttgattattagcaacctaaacaactcttctctcaaatatagttttct 24045094  T
Q  212 ctcctcccaaat 223  Q
    ||| ||||||||    
T  24045093 ctcttcccaaat 24045082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 13815477 - 13815696
Alignment:
Q  1 ttttttactcggtcaaaggcagttacactttattcataacgttcacaatttagtagtagctattattaaggctttagttttgcattacaaagatactgct 100  Q
    |||||||||  ||||||| || |||||||| ||||||||| || ||||||||||||   |||||||||||||||||||||||||||||||| | ||||||    
T  13815477 ttttttactgagtcaaagacaattacacttaattcataactttgacaatttagtag---ctattattaaggctttagttttgcattacaaaaaaactgct 13815573  T
Q  101 agcttggaaaaatgatttt-cacgggaaagaaaaagaggagttaagcttttttcttttctagcctttgatttgtagcaacctaaacaactcttctctcaa 199  Q
      ||||||||||||||||| |||| ||||||||| ||||||||||| |||| ||||||||||||||||||| ||||||||| ||||||||||||||| ||    
T  13815574 tacttggaaaaatgatttttcacgtgaaagaaaaggaggagttaagatttt-tcttttctagcctttgattagtagcaaccaaaacaactcttctctaaa 13815672  T
Q  200 atatagttttctctcctcccaaat 223  Q
    ||||||||||||||||||||||||    
T  13815673 atatagttttctctcctcccaaat 13815696  T

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Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 126 - 223
Target Start/End: Complemental strand, 10941595 - 10941499
Alignment:
Q  126 aaagaaaaagaggagttaagcttttttcttttctagccttt-gatttgtagcaacctaaacaactcttctctcaaatatagttttctctcctcccaaat 223  Q
    |||||||||||||| ||||| |||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10941595 aaagaaaaagagga-ttaag-ttttttcttttctagccttttgattagtagcaaccaaaacaactcttctctcaaatatagttttctctcctcccaaat 10941499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 126 - 223
Target Start/End: Complemental strand, 10947464 - 10947368
Alignment:
Q  126 aaagaaaaagaggagttaagcttttttcttttctagccttt-gatttgtagcaacctaaacaactcttctctcaaatatagttttctctcctcccaaat 223  Q
    |||||||||||||| ||||| |||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10947464 aaagaaaaagagga-ttaag-ttttttcttttctagccttttgattagtagcaaccaaaacaactcttctctcaaatatagttttctctcctcccaaat 10947368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 126 - 223
Target Start/End: Complemental strand, 10938238 - 10938142
Alignment:
Q  126 aaagaaaaagaggagttaagcttttttcttttctagccttt-gatttgtagcaacctaaacaactcttctctcaaatatagttttctctcctcccaaat 223  Q
    |||||||||||||| ||||| |||||||||||||||||||| |||  ||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  10938238 aaagaaaaagagga-ttaag-ttttttcttttctagccttttgatcagtagcaaccaaaacaactcttctctcaaatatagttttctctcctctcaaat 10938142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 93
Target Start/End: Original strand, 43287617 - 43287653
Alignment:
Q  57 tagctattattaaggctttagttttgcattacaaaga 93  Q
    |||||||||||||||||||| |||||||| |||||||    
T  43287617 tagctattattaaggctttatttttgcatgacaaaga 43287653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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