View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10630_low_12 (Length: 233)
Name: NF10630_low_12
Description: NF10630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10630_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 15 - 217
Target Start/End: Complemental strand, 21833216 - 21833014
Alignment:
| Q |
15 |
agagatttgacggagaaggttgtcgaggtcaccgtggaagcgagagaggttaagggaggtaagattggtgaaccttttgaagaggggacggatgagaggg |
114 |
Q |
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| T |
21833216 |
agagatttgacggagaaggttgttgaggtcaccgtggaagcgagagaggttaagggaggtaaggttggtgaatcttttgaagaggggacggatgagaggg |
21833117 |
T |
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| Q |
115 |
cgtgttggattgaggacagtcagtgataatcgaagaggatcgatgatggagaggaattgtttggagacagcggagagaggatacaagtagcgacgattgt |
214 |
Q |
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| T |
21833116 |
cgtgttggattgaggacagtcagtgataatcgaagaggatcgatgatggagaggaattgtttggagacagcggagagaggatacaagtagcgacgattgt |
21833017 |
T |
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| Q |
215 |
tgt |
217 |
Q |
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||| |
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| T |
21833016 |
tgt |
21833014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 208
Target Start/End: Original strand, 10615830 - 10616023
Alignment:
| Q |
15 |
agagatttgacggagaaggttgtcgaggtcaccgtggaagcgagagaggttaagggaggtaagattggtgaaccttttgaagaggggacggatgagaggg |
114 |
Q |
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|||||||| |||||||| ||| ||||||||||||||||| | |||||| ||||| |||| || ||||| ||||| |||||| | | | || |||| |
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| T |
10615830 |
agagattttgcggagaagagcgtcaaggtcaccgtggaagcgtgtgaggttgagggaattaaggtttgtgaatcttttaaagaggaggcaaaggaaaggg |
10615929 |
T |
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| Q |
115 |
cgtgttggattgaggacagtcagtgataatcgaagaggatcgatgatggagaggaattgtttggagacagcggagagaggatacaagtagcgac |
208 |
Q |
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| T |
10615930 |
cgtgttggattgaagatagtgagtgagaaccggatccggttggtgatggagaggagttgcttggagacaagggagagagaattcaagtagcgac |
10616023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 205
Target Start/End: Original strand, 6417209 - 6417399
Alignment:
| Q |
15 |
agagatttgacggagaaggttgtcgaggtcaccgtggaagcgagagaggttaagggaggtaagattggtgaaccttttgaagaggggacggatgagaggg |
114 |
Q |
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|||||||| ||||||||| || ||||| || || ||||| | |||||| ||||| |||| || ||||| ||||| |||||| ||| | || |||| |
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| T |
6417209 |
agagattttacggagaagagcatcaaggtcgccatgaaagcgtgtgaggttgagggaattaaggtttgtgaatcttttaaagaggcgacaaaggaaaggg |
6417308 |
T |
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| Q |
115 |
cgtgttggattgaggacagtcagtgataatcgaagaggatcgatgatggagaggaattgtttggagacagcggagagaggatacaagtagc |
205 |
Q |
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| T |
6417309 |
cgtgttggattgaggatagtcagtgtgaatcgaattcggttggtgatggagaggagttgcttggagacaagggagagaaaattcaagtagc |
6417399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 218
Target Start/End: Original strand, 28532997 - 28533139
Alignment:
| Q |
76 |
agattggtgaaccttttgaagaggggacggatgagagggcgtgttggattgaggacagtcagtgataatcgaagaggatcgatgatggagaggaattgtt |
175 |
Q |
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|||| ||||||||||||||||||| | | | || |||| |||||||||||| || ||| ||||| ||||| || | || ||||||||||||| ||| |
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| T |
28532997 |
agatgggtgaaccttttgaagaggctaagtaggaaagggggtgttggattgacgagagtgagtgagaatcggaggcgtccggtgatggagaggaaccgtt |
28533096 |
T |
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| Q |
176 |
tggagacagcggagagaggatacaagtagcgacgattgttgtt |
218 |
Q |
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|||| || | |||||||| | ||||| |||||| |||||||| |
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| T |
28533097 |
tggatacggtggagagagaactcaagttgcgacggttgttgtt |
28533139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 30827961 - 30828001
Alignment:
| Q |
58 |
gagaggttaagggaggtaagattggtgaaccttttgaagag |
98 |
Q |
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| T |
30827961 |
gagaggtcgagggaggtgagattggtgaaccttttgaagag |
30828001 |
T |
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