View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10630_low_2 (Length: 447)
Name: NF10630_low_2
Description: NF10630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10630_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 22 - 430
Target Start/End: Original strand, 24239699 - 24240111
Alignment:
| Q |
22 |
ataggaaaagcgttctctcacttgcattaatctgcattgtcttcgccgccggtgtccgaggtcagtcagctccaacaacatcaccagcttcg----ggta |
117 |
Q |
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| T |
24239699 |
ataggaaaagcgttctctcacttgcattaatatgcattgtcttcgccgccggtgtccgaggtcaggcagctccaacaacatcaccagcttcgatcaggta |
24239798 |
T |
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| Q |
118 |
gaggttgagaaagctaatacatgcgttgtggggcgcccaaatttgtcatgttgctttattaattgtactccacgctgcatggatgactgcaagcaaaagg |
217 |
Q |
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| T |
24239799 |
gaggttgagaaagctaatacatgcgttgtggggcgcccaaatttgtcatgttgctttatgaattgtactccacgctgcatggatgactgcaagcaaaagg |
24239898 |
T |
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| Q |
218 |
gctttcgttttggcggttattgcgattttgtaattaatcaaaaattatgttgctgcgttaccaattgagtgagttctagtgtttgtagtatgaaaataac |
317 |
Q |
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| T |
24239899 |
gctttcgttttggcggttattgcgaatttgtaattgatcaaaaattatgttgctgcgttaccaattgagtgagttctagtgtttgtagtatgaaaataac |
24239998 |
T |
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| Q |
318 |
atgcatgtaacgcttctaaaataaaataatgacctactttttaactatctatttagaaccttttgcaggtagattaccttggtgaacatttcaaagaaat |
417 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
24239999 |
atgcatgtaatgcttctaaaataaaataatgacctactttttaactatctatttagaaccttctgcaggtagattaccttggtgaacatttcaaagaaat |
24240098 |
T |
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| Q |
418 |
ttcatttctagat |
430 |
Q |
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| T |
24240099 |
ttcatttctagat |
24240111 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 5788007 - 5788049
Alignment:
| Q |
27 |
aaaagcgttctctcacttgcattaatctgcattgtcttcgccg |
69 |
Q |
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|||| |||||||||||| ||||| ||||||||||||||||||| |
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| T |
5788007 |
aaaaacgttctctcactcgcattgatctgcattgtcttcgccg |
5788049 |
T |
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