View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10630_low_3 (Length: 391)
Name: NF10630_low_3
Description: NF10630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10630_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 6 - 380
Target Start/End: Complemental strand, 49462985 - 49462587
Alignment:
| Q |
6 |
acatttttctgaaataattggaatgaactatgaagttatgaccaagaacttctaaattagaaaaagtatgtgacaaaattttaacatatatgatgaggca |
105 |
Q |
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| T |
49462985 |
acatttttctgaaataattggaatgaactatgaagttatgaccaagaacttctaaattagaaaaagtatgtgacaaaattttaacatatatgatgaggca |
49462886 |
T |
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| Q |
106 |
agataacgagtatcactaattttcacacaggaatgaatttgtttagcaatttcacggtgagaaaatttgggattggggaaaaattgaatgagcttgctga |
205 |
Q |
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| T |
49462885 |
agataatgagtatcactaattttcacacaggaatgaatttgtttagcaatttcacggtgagaaaatatgggattggggaaaaattgaatgagcttgctga |
49462786 |
T |
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| Q |
206 |
ttgtaaatgataaaagtattgattc----tattatagtggtcacttgctagtcttttgtttaattcccatcaaaaacagtttgttaaatgaaagtctggt |
301 |
Q |
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| T |
49462785 |
ttgtaaatgataaaagtattgattctatatattatagtggtcacttgctagtcttttgtttaattcccatcaaaaacagtttgttaaaagaaagtctggt |
49462686 |
T |
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| Q |
302 |
ggtgactaattgacatatagat--------------------tttgtatgatacaccatcatctttgaacaaattcagatttggcagctttggattctt |
380 |
Q |
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| T |
49462685 |
ggtgactaattgacatatagatgactaattgacatatagatctttgtatgatacaccatcatctttgaacaaattcagatttggcagctttggattctt |
49462587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 142
Target Start/End: Original strand, 19892356 - 19892440
Alignment:
| Q |
58 |
taaattagaaaaagtatgtgacaaaattttaacatatatgatgaggcaagataacgagtatcactaattttcacacaggaatgaa |
142 |
Q |
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| T |
19892356 |
taaattagaggaagtatgtgactatattttcacatatatgatgaggtaaggtaattactatcactagttttcaaacaagaatgaa |
19892440 |
T |
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