View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10630_low_4 (Length: 331)
Name: NF10630_low_4
Description: NF10630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10630_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 16 - 319
Target Start/End: Complemental strand, 30409300 - 30408997
Alignment:
| Q |
16 |
agaagctagcgatgaaagcactctgcctgaaaattctatccacagcgaggatatcggacaacatcatgtcttagaagcagaacagaaagagatgtctcat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30409300 |
agaagctagcgatgaaagcactctgcctgaaaattctatccacagcgaggatatcggacaacatcatgtcttagaagcagaacagaaagagatgtctcat |
30409201 |
T |
|
| Q |
116 |
gcagcaggagcaaagacctcagaggatggttataattggagaaaatatggccaaaaacaagtaaaaggtagtgaatatccgagaagctactacaaatgta |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30409200 |
gcagcaggagcaaagacctcagaggatggttataattggagaaaatatggccaaaaacaagtaaaaggtagtgaatatccgagaagctactacaaatgta |
30409101 |
T |
|
| Q |
216 |
ctcattctaattgtcaggtcaagaaaaaggtggaaagatcacacgatggccacataacagaaattatttacaagggtaatcataaccatgcaaaaccaca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30409100 |
ctcattctaattgtcaggtcaagaaaaaggtggaaagatcacacgatggccacataacagaaattatttacaagggtaatcataaccatgcaaaaccaca |
30409001 |
T |
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| Q |
316 |
ttca |
319 |
Q |
| |
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|||| |
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| T |
30409000 |
ttca |
30408997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 319
Target Start/End: Complemental strand, 30395636 - 30395336
Alignment:
| Q |
19 |
agctagcgatgaaagcactctgcctgaaaattctatccacagcgaggatatcggacaacatcatgtcttagaagcagaacagaaagagatgtctcatgca |
118 |
Q |
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||||||||||||||||| ||||| ||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
30395636 |
agctagcgatgaaagcattctgcttgaaaattcaatccacagcaaggatatcggacaacatcatgtcctagaagcagaacagaaagagatatctcatgca |
30395537 |
T |
|
| Q |
119 |
gcaggagcaaagacctcagaggatggttataattggagaaaatatggccaaaaacaagtaaaaggtagtgaatatccgagaagctactacaaatgtactc |
218 |
Q |
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| T |
30395536 |
gcaggagcaaagaccttacaggatggttataattggagaaaatatggccaaaaacaagtaaaaggcagtgaatatccgagaagctactacaaatgtaatc |
30395437 |
T |
|
| Q |
219 |
attctaattgtcaggtcaagaaaaaggtggaaagatcacacgatggccacataacagaaattatttacaagggtaatcataaccatgcaaaaccacattc |
318 |
Q |
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| T |
30395436 |
agtctaattgtcaggtcaggaaaaaggtggaaagatcacatgatggcaacataagagaaattatttacagtggtaatcataaccatgcaaaaccaaattc |
30395337 |
T |
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| Q |
319 |
a |
319 |
Q |
| |
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| |
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| T |
30395336 |
a |
30395336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 196
Target Start/End: Complemental strand, 26332619 - 26332563
Alignment:
| Q |
140 |
gatggttataattggagaaaatatggccaaaaacaagtaaaaggtagtgaatatccg |
196 |
Q |
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|||||||| ||||||||||||||||| || |||||||| ||||| || ||| ||||| |
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| T |
26332619 |
gatggttacaattggagaaaatatggacagaaacaagtgaaaggaagcgaaaatccg |
26332563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 137 - 230
Target Start/End: Original strand, 2056297 - 2056390
Alignment:
| Q |
137 |
gaggatggttataattggagaaaatatggccaaaaacaagtaaaaggtagtgaatatccgagaagctactacaaatgtactcattctaattgtc |
230 |
Q |
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|||||||| |||||||||||||||||||||||||| ||||| || ||||| || || || |||| |||||||| ||||||||||| ||||||| |
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| T |
2056297 |
gaggatggatataattggagaaaatatggccaaaagcaagttaagggtagcgagtaccctcgaagttactacaagtgtactcattcaaattgtc |
2056390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 134 - 230
Target Start/End: Complemental strand, 26967134 - 26967038
Alignment:
| Q |
134 |
tcagaggatggttataattggagaaaatatggccaaaaacaagtaaaaggtagtgaatatccgagaagctactacaaatgtactcattctaattgtc |
230 |
Q |
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||||| ||||| || ||||||||||||||||| ||||||||||| ||||| |||||| |||| ||||| || || ||||| ||| | ||||||||| |
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| T |
26967134 |
tcagatgatggatacaattggagaaaatatggacaaaaacaagtgaaaggaagtgaaaatccaagaagttattataaatgcacttaccctaattgtc |
26967038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 140 - 213
Target Start/End: Complemental strand, 31615428 - 31615355
Alignment:
| Q |
140 |
gatggttataattggagaaaatatggccaaaaacaagtaaaaggtagtgaatatccgagaagctactacaaatg |
213 |
Q |
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||||| || |||||| |||||||||| ||||| ||||| || || |||||| |||||||||| ||||||||||| |
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| T |
31615428 |
gatggatacaattggcgaaaatatggacaaaagcaagttaagggaagtgaaaatccgagaagttactacaaatg |
31615355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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