View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10630_low_5 (Length: 316)
Name: NF10630_low_5
Description: NF10630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10630_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 7 - 309
Target Start/End: Complemental strand, 46912157 - 46911856
Alignment:
| Q |
7 |
cacatgttaaaacttaaaagttcatctaaaaagattatgctgcactcgttagtttttgggaatttgctaggtgaaggacaacagacaaagataaaaatcc |
106 |
Q |
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| T |
46912157 |
cacatgttaaaacttaaaagttcatctaaaaagattatgctgcactcgttagtttttgggaatttgctaggtgaaggacaacagacaaagataaaaatcc |
46912058 |
T |
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| Q |
107 |
atataaatagcacgatgttgatagtaaattgctaatccaatataagacaaaaggatggagattagctatgtatgagacgtgagtacgctagtgtcaannn |
206 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46912057 |
atataaatagcacgatgttgatagtaaagtgctaatccaatataagacaaaaggatggagattagctatgtatgagacgtgagtacgctagtgtcaa-tt |
46911959 |
T |
|
| Q |
207 |
nnnnnnnnnnnnnataacatattggatgtacactaattagtaaataacttcaggtgagtccaaacaacgaaatgttttagcaaatttaatttcagttcct |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
46911958 |
ttttacattttttataacatattggatgtacactaattagtaaataacttcaggtgagtccaaacaacgaaatgttttagcaaaattaatttcagttcct |
46911859 |
T |
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| Q |
307 |
ttg |
309 |
Q |
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||| |
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| T |
46911858 |
ttg |
46911856 |
T |
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