View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10630_low_7 (Length: 290)
Name: NF10630_low_7
Description: NF10630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10630_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 20357276 - 20357496
Alignment:
| Q |
1 |
aataatgtagttataactgatagtatgtgagtcaggcttctatcttcgacaaatcaactttgctttatggatgccaaaggtgtcaatgaagacaaaacat |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20357276 |
aataatgtagttataactgatagtatgtgattcaggcttctatcttcgacaaatcaactttgctttatggatgccaaaggtgtcaatgaagacaaaacat |
20357375 |
T |
|
| Q |
101 |
ttaaactgatatattaaattatttaaaatgatagtattattgatcacattctggctgcataaatgctactcttgctaattctcatatgttttgttgtatt |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20357376 |
ttaaactgatatattaaattattttaaatgatagtattattgatcacattctggatgcataaatgctactcttgctaattctcatatgttttgttgtatt |
20357475 |
T |
|
| Q |
201 |
ttgttatgaagaaaatcacaa |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
20357476 |
ttgttatgaagaaaatcacaa |
20357496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 20354716 - 20354454
Alignment:
| Q |
1 |
aataatgtagttataactgatagtatgtgagtcaggcttctatcttcgacaaatcaactttgctttatggatgccaaaggtgtcaatgaagacaaaacat |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20354716 |
aataatgtagttataactgatagtatatgagtcaggcttcaatcttcgacaaatcaactttgctttatggatgccaaaggtgtcaatgaagacaaaacat |
20354617 |
T |
|
| Q |
101 |
ttaaactgatatattaaattatttaaaatgatagtattattgatcacattctggctgcataaatgctactcttgctaattctcatatgttttgttgtatt |
200 |
Q |
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||||||||||||||||||||| || ||||||||||||| |||||||||||||| | |||||||||| ||| |||||||||||||||||||||||| | || |
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| T |
20354616 |
ttaaactgatatattaaattactttaaatgatagtattgttgatcacattctgaccgcataaatgcaacttttgctaattctcatatgttttgttttgtt |
20354517 |
T |
|
| Q |
201 |
---ttgttatgaagaaaatcacaaaggctgaataatgtgaactgatataatagtgtcaatgaa |
260 |
Q |
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|||||||| || ||||| |||| || | |||||| |||||||||||||||||||||||| |
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| T |
20354516 |
gtattgttatgcagtgaatcataaagacttagtaatgtaaactgatataatagtgtcaatgaa |
20354454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 5285890 - 5286110
Alignment:
| Q |
1 |
aataatgtagttataactgatagtatgtgagtcaggcttctatcttcgacaaatcaactttgctttatggatgccaaaggtgtcaatgaagacaaaacat |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5285890 |
aataatgtagttataacttatagtatgtgattcaggcttctatcttcgacaaatcaactttgctttatggatgccagaggtgtcaatgaagacaaaacat |
5285989 |
T |
|
| Q |
101 |
ttaaactgatatattaaattatttaaaatgatagtattattgatcacattctggctgcataaatgctactcttgctaattctcatatgttttgttgtatt |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5285990 |
ttaaactgatatattaaattattttaaatgatagtattgttgatcacattctgactgcataaatcctactcttgctaattctcatatgttttgttgtatt |
5286089 |
T |
|
| Q |
201 |
ttgttatgaagaaaatcacaa |
221 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
5286090 |
ttgttatgaagaaaatcacaa |
5286110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 5283302 - 5283040
Alignment:
| Q |
1 |
aataatgtagttataactgatagtatgtgagtcaggcttctatcttcgacaaatcaactttgctttatggatgccaaaggtgtcaatgaagacaaaacat |
100 |
Q |
| |
|
||||||||||| ||||||||| | | |||||| |||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
5283302 |
aataatgtagtgataactgattgaaagtgagttaggcttctatcttcaacaaatcaacttagcttattggatgccaaaggtgtcaatgaagacaaaacat |
5283203 |
T |
|
| Q |
101 |
ttaaactgatatattaaattatttaaaatgatagtattattgatcacattctggctgcataaatgctactcttgctaattctcatatgttttgttgtatt |
200 |
Q |
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||||| ||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
5283202 |
ttaaaaagatatattaaattatttttaatgatagtattattgatcacattatgactgcataaatgctactcttgctaattctcatatgttttgttttgtt |
5283103 |
T |
|
| Q |
201 |
---ttgttatgaagaaaatcacaaaggctgaataatgtgaactgatataatagtgtcaatgaa |
260 |
Q |
| |
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|||||||| ||| ||||| |||| || | |||||| |||||||||||||||||||||||| |
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| T |
5283102 |
gtattgttatgcagagaatcataaagacttagtaatgtaaactgatataatagtgtcaatgaa |
5283040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 191
Target Start/End: Complemental strand, 26091669 - 26091610
Alignment:
| Q |
132 |
tagtattattgatcacattctggctgcataaatgctactcttgctaattctcatatgttt |
191 |
Q |
| |
|
||||||| |||||||||||||| |||||| |||| |||| ||||||| |||||||||||| |
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| T |
26091669 |
tagtattgttgatcacattctgactgcatgaatggtactattgctaactctcatatgttt |
26091610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 6234932 - 6234983
Alignment:
| Q |
142 |
gatcacattctggctgcataaatgctactcttgctaattctcatatgttttgtt |
195 |
Q |
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|||||||||||| |||||||||| |||||||||| |||||||||||||||||| |
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| T |
6234932 |
gatcacattctgactgcataaattctactcttgc--attctcatatgttttgtt |
6234983 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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