View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10630_low_8 (Length: 280)
Name: NF10630_low_8
Description: NF10630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10630_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 6 - 264
Target Start/End: Complemental strand, 24638504 - 24638246
Alignment:
| Q |
6 |
agaagcaaaggtgaaactgtaagtaaaaatcatagctcctcctcttgaaggaacgaagcgtatggaatctgttcttgtcaataatcgcttcctcgaacat |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24638504 |
agaagcaaaggtgaaactgtaagtaaaaatcatagctcctcctcttgaaggaacgaagcgtatggaatctgttcttgtcaataatcgcttcctcgaacat |
24638405 |
T |
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| Q |
106 |
gcaggagaatccaccattattaattattatattgttgttctaattctaacaaagaattaatatatgctacttttatttatttacaaagctatgtttcttg |
205 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24638404 |
gcaggagaatctaccattattaattattatattgttgttctaattctaacaaagaattaatatatgctacttttatttatttacaaagctatgtttcttg |
24638305 |
T |
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| Q |
206 |
ttctgtacgcaatgttcaaagaagaagaaaatgggggagatgatggctgaagttgaagt |
264 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24638304 |
ttctgtatgcaatgttcaaagaagaagaaaatgggggagatgatggctgaagttgaagt |
24638246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 6 - 264
Target Start/End: Original strand, 52492262 - 52492520
Alignment:
| Q |
6 |
agaagcaaaggtgaaactgtaagtaaaaatcatagctcctcctcttgaaggaacgaagcgtatggaatctgttcttgtcaataatcgcttcctcgaacat |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52492262 |
agaagcaaaggtgaaactgtaagtaaaaatcatagctcctcctcttgaaggaacgaagcgtatggaatctgttcttgtcaataatcgcttcctcgaacat |
52492361 |
T |
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| Q |
106 |
gcaggagaatccaccattattaattattatattgttgttctaattctaacaaagaattaatatatgctacttttatttatttacaaagctatgtttcttg |
205 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52492362 |
gcaggagaatctaccattattaattattatattgttgttctaattctaacaaagaattaatatatgctacttttatttatttacaaagctatgtttcttg |
52492461 |
T |
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| Q |
206 |
ttctgtacgcaatgttcaaagaagaagaaaatgggggagatgatggctgaagttgaagt |
264 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52492462 |
ttctgtatgcaatgttcaaagaagaagaaaatgggggagatgatggctgaagttgaagt |
52492520 |
T |
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