View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10631_high_2 (Length: 373)
Name: NF10631_high_2
Description: NF10631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10631_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 24065063 - 24064705
Alignment:
| Q |
1 |
gagcttaaatcgtggttgaataatttcttaaacataatcctcccaccttatgaattttctgaatcagagttctttaattatagatggttgttt--ataat |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||| |
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| T |
24065063 |
gagcttaaatcgtggttgaataatttcttaaacataatcctcccaccttatgaattttctgaatcagagttctttaattataaatggttgtgttcataat |
24064964 |
T |
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| Q |
99 |
attcttacaagtttaatatacttatttaggcattggcatactcccacacttttcttcactaaattagaattatttatttagaaatgattacatgcttata |
198 |
Q |
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||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
24064963 |
attcttacaaggttaatatacttatttaggtacaggcatactcccacacttttcttcactaaataagaattatttatttagaaatgattacatgcttata |
24064864 |
T |
|
| Q |
199 |
atattttaacaaagattataattattcaggtattgggatactctcaatgccatatgcagtttcacaaggagggtggctgagtttcatgctactaattata |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||| |
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| T |
24064863 |
atattttaacaaagattataattattcaggtattgggatactctcaatgccatatgcagtttctcaaggaggatggctgagtttcatgctactaatcata |
24064764 |
T |
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| Q |
299 |
tttgcaatgatatgttggtacacagctttacttctagaaaggtgtatgaatcaacaacc |
357 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24064763 |
tttgccatgatatgttggtacacagctttacttctagaaaggtgtatgaatcaacaacc |
24064705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 223 - 357
Target Start/End: Complemental strand, 24017356 - 24017222
Alignment:
| Q |
223 |
ttcaggtattgggatactctcaatgccatatgcagtttcacaaggagggtggctgagtttcatgctactaattatatttgcaatgatatgttggtacaca |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
24017356 |
ttcaggtattgggatactctcaatgccatatgcagtttcacaaggagggtggctgagtttcatgttactaattatatttgccatgatatgttggtacaca |
24017257 |
T |
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| Q |
323 |
gctttacttctagaaaggtgtatgaatcaacaacc |
357 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
24017256 |
gctttacttctagaaaggtgtatgaatcaacaacc |
24017222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 223 - 357
Target Start/End: Complemental strand, 24075294 - 24075160
Alignment:
| Q |
223 |
ttcaggtattgggatactctcaatgccatatgcagtttcacaaggagggtggctgagtttcatgctactaattatatttgcaatgatatgttggtacaca |
322 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||| |
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| T |
24075294 |
ttcaggtattggcatactctcaatgccatatgcagtttcacaaggagggtggctgagtttcatgctactaatcatttttgccatgatatgttggtacaca |
24075195 |
T |
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| Q |
323 |
gctttacttctagaaaggtgtatgaatcaacaacc |
357 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
24075194 |
gctttacttctagaaaggtgtatgaatcaacaacc |
24075160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 223 - 349
Target Start/End: Complemental strand, 23246675 - 23246549
Alignment:
| Q |
223 |
ttcaggtattgggatactctcaatgccatatgcagtttcacaaggagggtggctgagtttcatgctactaattatatttgcaatgatatgttggtacaca |
322 |
Q |
| |
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|||||||||||| ||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
23246675 |
ttcaggtattggaatactatcaatgccatatgcagtttctcaaggagggtggttgagtttcatgctactaattatatttgccatgatatgttgttacaca |
23246576 |
T |
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| Q |
323 |
gctttacttctagaaaggtgtatgaat |
349 |
Q |
| |
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||||||||| |||| |||||||||||| |
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| T |
23246575 |
gctttacttttagataggtgtatgaat |
23246549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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