View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10631_high_3 (Length: 348)
Name: NF10631_high_3
Description: NF10631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10631_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 13 - 284
Target Start/End: Original strand, 2587698 - 2587969
Alignment:
| Q |
13 |
aacctgtgtaatcaaccaattaaattaaatttacaggtcatatataaggcattaactataatacacgttatgacaacaacattaatgaaattattccttc |
112 |
Q |
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| T |
2587698 |
aacctgtgtaatcaaccaattaaattaaatttacaggtcatatataaggcattaactataatacacgttatgacaacaacattaatgaaattattccttc |
2587797 |
T |
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| Q |
113 |
ttaattaaatgaagacaacaatcaagtcaaaataattagtagtttgagcttgcttaaatcataatacaacgaactgatttttccgtccttctcacactgt |
212 |
Q |
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| T |
2587798 |
ttaattaaatgaagacaacaatcaagtcaaaataattagtagtttgagcttgcttaaatcataatacaacgaactgatttttccgtccttctcacactgt |
2587897 |
T |
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| Q |
213 |
cactcatattatgttttagaggattctactcgaagttattataaaataaagatttaattaaaatgttatatc |
284 |
Q |
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| T |
2587898 |
cactcatattatgttttagaggattctactcgaagttattataaaataaaaatttaattaaaatgttatatc |
2587969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 20351686 - 20351636
Alignment:
| Q |
284 |
caatgttgttaacggagatggtgagcactcgcagtcaacaagggtgattaa |
334 |
Q |
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| T |
20351686 |
caatgttgttaacggagatggtgagcactcacagtcaacaagggtgattaa |
20351636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 5583642 - 5583692
Alignment:
| Q |
284 |
caatgttgttaacggagatggtgagcactcgcagtcaacaagggtgattaa |
334 |
Q |
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| T |
5583642 |
caatgttgttaacagagatggtgagcactcgcagtcaacaaggatgattaa |
5583692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 19934382 - 19934332
Alignment:
| Q |
284 |
caatgttgttaacggagatggtgagcactcgcagtcaacaagggtgattaa |
334 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
19934382 |
caatgttgttaacggagatggtgagcactcacagtcaacaagggtgattaa |
19934332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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