View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10631_low_11 (Length: 241)
Name: NF10631_low_11
Description: NF10631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10631_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 6 - 231
Target Start/End: Complemental strand, 25855684 - 25855457
Alignment:
| Q |
6 |
gcaaatcttcaatgaatttcggacttgtgcattgttataagaagaagttcatccttcaatcaaataaatcagcatcgattccaaagcgtctataacacta |
105 |
Q |
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| T |
25855684 |
gcaaatcttcaatgaatttcggacttgtgcattgttataagaagaagttcatccttcaatcaaataaatcagcatcagttccaaagcgtctataacacta |
25855585 |
T |
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| Q |
106 |
gtnnnnnnnnnnn--cacaaattagatgataaataacctccctaattccaaaatatgtttagcccaacttttatgtttaatgtaaagaaaaattaataat |
203 |
Q |
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| T |
25855584 |
gccaaaaaaaagaaacacaaattagatgataaataacctccctaattccaaaatatgtttagcccaacttttatgtttaatgtaaagaaaaactaataat |
25855485 |
T |
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| Q |
204 |
aaattgggccaaacatgtatctttcatc |
231 |
Q |
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| T |
25855484 |
aaattgggccaaacatatatctttcatc |
25855457 |
T |
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Back To:
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 27049343 - 27049413
Alignment:
| Q |
3 |
tttgcaaatcttcaatgaatttcggacttgtgcattgttataagaagaagttcatccttcaatcaaataaa |
73 |
Q |
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| T |
27049343 |
tttgcaaatcctccataaattttgaacttatgcattgtcataaggagaagttcatccttccgtcaaataaa |
27049413 |
T |
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