View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10631_low_12 (Length: 240)
Name: NF10631_low_12
Description: NF10631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10631_low_12 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 8472195 - 8472414
Alignment:
| Q |
17 |
atgttggacagttggaataaggttaaagaagaagaaaaggccaaagccaactaaaacctaaacaataagcctagtcgattaacaccatacaactnnnnnn |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8472195 |
atgttggacagttggaataaggttaaagaagaagaaaaggccaaagccaactaaaacctaaacaataagcctagtcgatcaacaccatacaact-aaaaa |
8472293 |
T |
|
| Q |
117 |
ntatcagccagcctgtctattcacatagtgtatagctgttaactataaccaacaaatgatatgatatgagagaaaataacaagat--acacacacatact |
214 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
8472294 |
atatcaaccagcctgtctattcacatagtgtatagctgttaactatagccaacaa-----atgatatgagagaaaataacaagatacacacacacatact |
8472388 |
T |
|
| Q |
215 |
ctcttgatgaatggacatgtggaatt |
240 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
8472389 |
ctcttgatgaatggacatgtggaatt |
8472414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University