View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10631_low_14 (Length: 238)
Name: NF10631_low_14
Description: NF10631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10631_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 14 - 216
Target Start/End: Original strand, 36188278 - 36188480
Alignment:
| Q |
14 |
cacagaggaaattactgcaagaaaaagggaaatcttaccataatggatacatgtctcggatataatacaaacacaagcatttgacagaatacaaaatctt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36188278 |
cacagaggaaattactgcaagaaaaagggaaatcttaccataatggatacatgtctcggatataatacaaacacaagcatttgacagaatacaaaatctt |
36188377 |
T |
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| Q |
114 |
agttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttatgattttcatcatct |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36188378 |
agttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttatgattttcatcatct |
36188477 |
T |
|
| Q |
214 |
ctg |
216 |
Q |
| |
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||| |
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|
| T |
36188478 |
ctg |
36188480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 9 - 216
Target Start/End: Original strand, 36196590 - 36196798
Alignment:
| Q |
9 |
agaagcacagaggaaattactgcaagaaaaaggg-aaatcttaccataatggatacatgtctcggatataatacaaacacaagcatttgacagaatacaa |
107 |
Q |
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|||| |||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36196590 |
agaaccacagacgaaattactgcaagaaacaggggaaatcttaccataatggatacatgtctcggatataatacaaacacaagcatttgacagaatacaa |
36196689 |
T |
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| Q |
108 |
aatcttagttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttatgattttca |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36196690 |
aatcttagttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttatgattttca |
36196789 |
T |
|
| Q |
208 |
tcatctctg |
216 |
Q |
| |
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||||||||| |
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| T |
36196790 |
tcatctctg |
36196798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 9 - 216
Target Start/End: Original strand, 36209714 - 36209921
Alignment:
| Q |
9 |
agaagcacagaggaaattactgcaagaaa-aagggaaatcttaccataatggatacatgtctcggatataatacaaacacaagcatttgacagaatacaa |
107 |
Q |
| |
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|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
36209714 |
agaaccacagaggaaattactgcaagaaacaagggaaatcttaccataatggatacatgtatcggacataatacaaacacaagcatttgacagaatacaa |
36209813 |
T |
|
| Q |
108 |
aatcttagttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttatgattttca |
207 |
Q |
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|||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
36209814 |
aatcttagttcatctataactgc-aaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttcgacttcagattttca |
36209912 |
T |
|
| Q |
208 |
tcatctctg |
216 |
Q |
| |
|
||||||||| |
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|
| T |
36209913 |
tcatctctg |
36209921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 116 - 197
Target Start/End: Original strand, 36198878 - 36198958
Alignment:
| Q |
116 |
ttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggactt |
197 |
Q |
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|||||||||||||| |||||||||| ||| |||||||||||||||||| |||||||||||| ||||||||||||| ||||| |
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| T |
36198878 |
ttcatctataccta-aaaagcacttaccaatctctaatctctccaacattgtgttttccaaaggatgtgcatgtttagactt |
36198958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 79 - 215
Target Start/End: Original strand, 36207688 - 36207824
Alignment:
| Q |
79 |
tacaaacacaagcatttgacagaata-caaaatcttagttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaa |
177 |
Q |
| |
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||||| ||||||||||| |||||| | |||||||||||||||| || | | ||||| ||| | | |||||||||||||||||||||||||||||| | | |
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| T |
36207688 |
tacaagcacaagcatttaacagaaaaacaaaatcttagttcatatacaacaacaaat-cacatgtgaacctctaatctctccaacatggtgttttcgata |
36207786 |
T |
|
| Q |
178 |
cgatgtgcatgtttggacttatgattttcatcatctct |
215 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||| |
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| T |
36207787 |
tgatgtgcatgtttggacttcaaattttcatcaactct |
36207824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 105 - 216
Target Start/End: Original strand, 36214722 - 36214832
Alignment:
| Q |
105 |
caaaatcttagttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttatgattt |
204 |
Q |
| |
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|||| ||||| || ||||||||| ||||| |||||| |||| |||||||||| ||||||| |||||||||||| | |||||||||||||||| |||| |
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| T |
36214722 |
caaagtcttaattgatctataccaacaaa-gcacttgtcaatctctaatctccccaacattgtgttttccaaataaagtgcatgtttggacttcaaattt |
36214820 |
T |
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| Q |
205 |
tcatcatctctg |
216 |
Q |
| |
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||| |||||||| |
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| T |
36214821 |
tcaccatctctg |
36214832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 79 - 216
Target Start/End: Original strand, 36184500 - 36184641
Alignment:
| Q |
79 |
tacaaacacaagcatttgacagaata-caaaatcttagttcatctatacctacaaaagcacttctcaac----ctctaatctctccaacatggtgttttc |
173 |
Q |
| |
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||||| ||||||||||| |||||| | ||||||||||||||||||| | | || ||||||||| | ||| ||||||||||||||||||||||| ||| |
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| T |
36184500 |
tacaagcacaagcatttaacagaaaaacaaaatcttagttcatctacaacaac-aaagcacttgtgaacctctctctaatctctccaacatggtgtcttc |
36184598 |
T |
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| Q |
174 |
caaacgatgtgcatgtttggacttatgattttcatcatctctg |
216 |
Q |
| |
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| | ||| | ||||||||||||| ||||||||||| ||||| |
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| T |
36184599 |
cgtatgatattcatgtttggacttcagattttcatcaactctg |
36184641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 192
Target Start/End: Original strand, 36200857 - 36200944
Alignment:
| Q |
104 |
acaaaatcttagttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttg |
192 |
Q |
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|||||||||||||||||||| ||| ||| | |||| | |||||| |||||| ||||||||||||| |||||| | |||||||||||||| |
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| T |
36200857 |
acaaaatcttagttcatctacaccaacaca-gcacctgtcaaccactaatcactccaacatggtgctttccatatgatgtgcatgtttg |
36200944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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