View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10631_low_18 (Length: 227)
Name: NF10631_low_18
Description: NF10631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10631_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 4 - 226
Target Start/End: Complemental strand, 17754506 - 17754284
Alignment:
| Q |
4 |
acactcatacgaaggcctcacaaacttattcaatagtacagtttaaaaattgtgaatcttaggaatgaaaatacactgttacaagcatattttgcatggc |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
17754506 |
acactcatacgaaggcctcacaaacttattcaatagtacagtttaaaaattgtgaatcttaggaatgaaaatacactgttacaagcatattttgcatcgc |
17754407 |
T |
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| Q |
104 |
gtgacattaccttcaactggacttgacgcatgactcatcgtatgtccatttgctaccacttcttccgaaaatggtgatccagagttattgttgtccccaa |
203 |
Q |
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|||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
17754406 |
gtgacattaccttcaactggacttgaggcacgactcatcatatgtccatttgctaccacttcttccgaaaatggtgatccagagttattgctgtccccaa |
17754307 |
T |
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| Q |
204 |
tatttgaaaaactatctaacaac |
226 |
Q |
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| |||||| |||||||||||||| |
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| T |
17754306 |
tctttgaagaactatctaacaac |
17754284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 4 - 226
Target Start/End: Complemental strand, 17763493 - 17763271
Alignment:
| Q |
4 |
acactcatacgaaggcctcacaaacttattcaatagtacagtttaaaaattgtgaatcttaggaatgaaaatacactgttacaagcatattttgcatggc |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
17763493 |
acactcatacgaaggcctcacaaacttattcaatagtacagtttaaaaattgtgaatcttaggaatgaaaatacactgttacaagcatattttgcatcgc |
17763394 |
T |
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| Q |
104 |
gtgacattaccttcaactggacttgacgcatgactcatcgtatgtccatttgctaccacttcttccgaaaatggtgatccagagttattgttgtccccaa |
203 |
Q |
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|||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
17763393 |
gtgacattaccttcaactggacttgaggcacgactcatcatatgtccatttgctaccacttcttccgaaaatggtgatccagagttattgctgtccccaa |
17763294 |
T |
|
| Q |
204 |
tatttgaaaaactatctaacaac |
226 |
Q |
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| |||||| |||||||||||||| |
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| T |
17763293 |
tctttgaagaactatctaacaac |
17763271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 15 - 222
Target Start/End: Complemental strand, 17740511 - 17740304
Alignment:
| Q |
15 |
aaggcctcacaaacttattcaatagtacagtttaaaaattgtgaatcttaggaatgaaaatacactgttacaagcatattttgcatggcgtgacattacc |
114 |
Q |
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||||||| ||||| | ||||| ||| || || ||| |||| || ||||| |||||||||||| | |||||||||||||||||||||| ||||||||||| |
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| T |
17740511 |
aaggcctgacaaagtgtttcaacagttcaattaaaacattgggattcttaagaatgaaaatactccgttacaagcatattttgcatggtgtgacattacc |
17740412 |
T |
|
| Q |
115 |
ttcaactggacttgacgcatgactcatcgtatgtccatttgctaccacttcttccgaaaatggtgatccagagttattgttgtccccaatatttgaaaaa |
214 |
Q |
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||||| ||||||||| |||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||| || |
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| T |
17740411 |
ttcaagtggacttgaggcatgactcatcatgtgtccatttgctaccacttcttctgaaaatggtgatccagagttattgctgtccccaatctttgaagaa |
17740312 |
T |
|
| Q |
215 |
ctatctaa |
222 |
Q |
| |
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|||||||| |
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| T |
17740311 |
ctatctaa |
17740304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 15 - 222
Target Start/End: Complemental strand, 15736446 - 15736239
Alignment:
| Q |
15 |
aaggcctcacaaacttattcaatagtacagtttaaaaattgtgaatcttaggaatgaaaatacactgttacaagcatattttgcatggcgtgacattacc |
114 |
Q |
| |
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||||||||||||| | ||||| ||| || || ||||||| || ||||| ||||||||||| |||||||||||||||||| ||||| |||||||||| |
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| T |
15736446 |
aaggcctcacaaagtggttcaacagttcaattgaaaaattcggattcttaagaatgaaaataatatgttacaagcatattttgaatggcatgacattacc |
15736347 |
T |
|
| Q |
115 |
ttcaactggacttgacgcatgactcatcgtatgtccatttgctaccacttcttccgaaaatggtgatccagagttattgttgtccccaatatttgaaaaa |
214 |
Q |
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||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||| |||||| || |
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| T |
15736346 |
ttcaactggacttgaggcatgactcatcatatgtccatttgctaccacttcttcggaaaatggtgatccggagttattgctgtccccaatctttgaagaa |
15736247 |
T |
|
| Q |
215 |
ctatctaa |
222 |
Q |
| |
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|| ||||| |
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| T |
15736246 |
ctttctaa |
15736239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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