View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10631_low_6 (Length: 260)

Name: NF10631_low_6
Description: NF10631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10631_low_6
NF10631_low_6
[»] chr5 (11 HSPs)
chr5 (44-260)||(39475609-39475825)
chr5 (44-260)||(39451103-39451319)
chr5 (48-260)||(39486572-39486784)
chr5 (86-260)||(39483405-39483576)
chr5 (51-255)||(39470618-39470816)
chr5 (48-255)||(39472143-39472344)
chr5 (47-255)||(39460356-39460561)
chr5 (48-196)||(39464451-39464596)
chr5 (82-255)||(39454780-39454947)
chr5 (148-200)||(39458207-39458259)
chr5 (224-260)||(43312390-43312426)


Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 44 - 260
Target Start/End: Original strand, 39475609 - 39475825
Alignment:
Q  44 gtcaacactaaatcccttcctatctcagaatctctcaacatcatcaaccttccagaagtttctcttcccccaaacaccgatccaggtttctcttccatga 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39475609 gtcaacactaaatcccttcctatctcagaatctctcaacatcatcaaccttccagaagtttctcttcccccaaacaccgatccaggtttctcttccatga 39475708  T
Q  144 cagctctcctcgaagctcagaaaccaaacgtaaaacaagctgtctccaacctcactactagagaaggacaacatggacacctcgccgccttcgttgttga 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39475709 cagctctcctcgaagctcagaaaccaaacgtaaaacaagctgtctccaacctcactactagagaaggacaacatggacacctcgccgccttcgttgttga 39475808  T
Q  244 catgttctgcaccacca 260  Q
    |||||||||||||||||    
T  39475809 catgttctgcaccacca 39475825  T

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Target: chr5; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 44 - 260
Target Start/End: Original strand, 39451103 - 39451319
Alignment:
Q  44 gtcaacactaaatcccttcctatctcagaatctctcaacatcatcaaccttccagaagtttctcttcccccaaacaccgatccaggtttctcttccatga 143  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||     
T  39451103 gtcaacactaaatcccttcctatctcagattctctcaacatcatcaaccttccagaagtttctcttcctccaaacaccaatccaggtttcgcttccatgc 39451202  T
Q  144 cagctctcctcgaagctcagaaaccaaacgtaaaacaagctgtctccaacctcactactagagaaggacaacatggacacctcgccgccttcgttgttga 243  Q
    | |||||||||||||||||||||||||| || |||||||| || || |||||||||||| ||| |||| || |||||  ||||||| || ||||||||||    
T  39451203 ctgctctcctcgaagctcagaaaccaaatgtcaaacaagccgtttctaacctcactactggaggaggagaaaatggagtcctcgccaccatcgttgttga 39451302  T
Q  244 catgttctgcaccacca 260  Q
    |||||||||||||||||    
T  39451303 catgttctgcaccacca 39451319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 48 - 260
Target Start/End: Original strand, 39486572 - 39486784
Alignment:
Q  48 acactaaatcccttcctatctcagaatctctcaacatcatcaaccttccagaagtttctcttcccccaaacaccgatccaggtttctcttccatgacagc 147  Q
    |||| ||||||||||| || || || |||||| |  |||||||||||||||||  ||||||||||||||||||||| ||| ||||   |  |||||  ||    
T  39486572 acacaaaatcccttcccatttccgattctctccaggtcatcaaccttccagaatgttctcttcccccaaacaccgaaccacgttt---tgtcatgaacgc 39486668  T
Q  148 tctcctcgaagctcagaaaccaaacgtaaaacaagctgtctccaacctcactactagagaaggaca---acatggacacctcgccgccttcgttgttgac 244  Q
    |||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||   || ||||||||| ||||||||||||||||||    
T  39486669 tctccttgaagctcagaaaccaaacgtcaaacaagctgtatccaacctcactactagagaaggacaaccacctggacaccttgccgccttcgttgttgac 39486768  T
Q  245 atgttctgcaccacca 260  Q
    ||||||||||||||||    
T  39486769 atgttctgcaccacca 39486784  T

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Target: chr5; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 86 - 260
Target Start/End: Original strand, 39483405 - 39483576
Alignment:
Q  86 atcaaccttccagaagtttctcttcccccaaacaccgatccaggtttctcttccatgacagctctcctcgaagctcagaaaccaaacgtaaaacaagctg 185  Q
    |||||||||||||||  || |||||||||||||  ||||| || ||   || |||| |  |||||||| |||||||||||||||||| ||| ||||||||    
T  39483405 atcaaccttccagaatgttatcttcccccaaacttcgatctagttt---ctgccatcaacgctctccttgaagctcagaaaccaaacataatacaagctg 39483501  T
Q  186 tctccaacctcactactagagaaggacaacatggacacctcgccgccttcgttgttgacatgttctgcaccacca 260  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  39483502 tctccaacctcactactagagaaggacaacatggacacctctccgccttcgttgttgacatgttctgcaccacca 39483576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 51 - 255
Target Start/End: Complemental strand, 39470816 - 39470618
Alignment:
Q  51 ctaaatcccttcctatctcagaatctctcaacatcatcaaccttccagaagtttctcttcccccaaacaccgatccaggtttctcttccatgacagctct 150  Q
    |||||||| |||| ||||| || |||||| |  ||||||||||||||||||||||| ||| ||||| | | ||||||||||    |   ||||  |||||    
T  39470816 ctaaatccattcccatctctgattctctccatgtcatcaaccttccagaagtttctgttctcccaacctctgatccaggttcggat---atgaacgctct 39470720  T
Q  151 cctcgaagctcagaaaccaaacgtaaaacaagctgtctccaacctcactactagagaaggacaacatggacacctcgccgccttcgttgttgacatgttc 250  Q
    |||||||||||| ||| ||||||| ||||||||| ||||||||||||||||| ||||   ||||||||||| |||||||||  || ||||||||||||||    
T  39470719 cctcgaagctcataaagcaaacgtcaaacaagctatctccaacctcactactggaga---acaacatggacccctcgccgctgtcattgttgacatgttc 39470623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 48 - 255
Target Start/End: Original strand, 39472143 - 39472344
Alignment:
Q  48 acactaaatcccttcctatctcagaatctctcaacatcatcaaccttccagaagtttctcttcccccaaacaccgatccaggtttctcttccatgacagc 147  Q
    |||||||||||||||||||||| || || ||| ||||||||||||||||||||  ||||||| |||||||||| |||| ||||  ||||   ||||| ||    
T  39472143 acactaaatcccttcctatctccgattcactccacatcatcaaccttccagaatgttctcttgccccaaacacagatcaaggtccctct---atgactgc 39472239  T
Q  148 tctcctcgaagctcagaaaccaaacgtaaaacaagctgtctccaacctcactactagagaaggacaacatggacacctcgccgccttcgttgttgacatg 247  Q
     |||||||||||||||||||||||||| |||||||  || || ||||||| ||| |||  ||   || |||||  ||| ||||| || ||||||||||||    
T  39472240 gctcctcgaagctcagaaaccaaacgtcaaacaagtagtatctaacctcattaccagatcag---aaaatggagtccttgccgcttttgttgttgacatg 39472336  T
Q  248 ttctgcac 255  Q
    ||||||||    
T  39472337 ttctgcac 39472344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 47 - 255
Target Start/End: Original strand, 39460356 - 39460561
Alignment:
Q  47 aacactaaatcccttcctatctcagaatctctcaacatcatcaaccttccagaagtttctcttcccccaaacaccgatccaggtttctcttccatgacag 146  Q
    ||||||||||| ||||| |  || || |||||| ||||||||||||||||||||||||||||||||||||||| ||| |||  |   ||    ||||  |    
T  39460356 aacactaaatcacttcccacttctgattctctcgacatcatcaaccttccagaagtttctcttcccccaaacatcgaaccaact---tccagaatgatgg 39460452  T
Q  147 ctctcctcgaagctcagaaaccaaacgtaaaacaagctgtctccaacctcactactagagaaggacaacatggacacctcgccgccttcgttgttgacat 246  Q
    || ||||||||||||||||| ||||||| |||||||| || || || ||||||||||    || | ||||||||  |||| | ||||| |||||||||||    
T  39460453 ctttcctcgaagctcagaaatcaaacgtcaaacaagccgtatctaatctcactactactagagaaaaacatggaaccctcacagcctttgttgttgacat 39460552  T
Q  247 gttctgcac 255  Q
    |||||||||    
T  39460553 gttctgcac 39460561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 48 - 196
Target Start/End: Complemental strand, 39464596 - 39464451
Alignment:
Q  48 acactaaatcccttcctatctcagaatctctcaacatcatcaaccttccagaagtttctcttcccccaaacaccgatccaggtttctcttccatgacagc 147  Q
    ||||||||||| |||| || || || ||||| ||  |||||||||||||||||||||||||||||| || | | |||||||||| | ||   ||||  ||    
T  39464596 acactaaatccattcccatatctgattctcttaatgtcatcaaccttccagaagtttctcttccccaaacctctgatccaggttccgct---atgaacgc 39464500  T
Q  148 tctcctcgaagctcagaaaccaaacgtaaaacaagctgtctccaacctc 196  Q
    |||||| || ||||| ||||||||||| |||||||| ||||| ||||||    
T  39464499 tctccttgatgctcacaaaccaaacgtcaaacaagccgtctctaacctc 39464451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 82 - 255
Target Start/End: Original strand, 39454780 - 39454947
Alignment:
Q  82 catcatcaaccttccagaagtttctcttcccccaaacaccgatccaggtttctcttccatgacagctctcctcgaagctcagaaaccaaacgtaaaacaa 181  Q
    |||||||||||||||||||   |||||||||||||||||  |||||| || |||   |||| | |||| ||| |||||||||||||||||||| ||||||    
T  39454780 catcatcaaccttccagaatgctctcttcccccaaacactaatccagtttcctc---catgtccgctcaccttgaagctcagaaaccaaacgtcaaacaa 39454876  T
Q  182 gctgtctccaacctcactactagagaaggacaacatggacacctcgccgccttcgttgttgacatgttctgcac 255  Q
    || || || ||||||| |||| | ||||  |||  ||||  |||||| || |||||||||||||||| ||||||    
T  39454877 gccgtatctaacctcattactggtgaag--caa-gtggagtcctcgcagctttcgttgttgacatgtcctgcac 39454947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 39458259 - 39458207
Alignment:
Q  148 tctcctcgaagctcagaaaccaaacgtaaaacaagctgtctccaacctcacta 200  Q
    ||||||| ||||||||||||||||||| ||| |||| ||||||||||||||||    
T  39458259 tctcctcaaagctcagaaaccaaacgtcaaaaaagccgtctccaacctcacta 39458207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 224 - 260
Target Start/End: Complemental strand, 43312426 - 43312390
Alignment:
Q  224 ctcgccgccttcgttgttgacatgttctgcaccacca 260  Q
    ||||| |||||||||||||||||||||||||||||||    
T  43312426 ctcgctgccttcgttgttgacatgttctgcaccacca 43312390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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