View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10631_low_7 (Length: 257)
Name: NF10631_low_7
Description: NF10631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10631_low_7 |
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| [»] scaffold0311 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 31389709 - 31389939
Alignment:
| Q |
16 |
attttcaagggcaaagagtacttcagtcataaccaaatgcgaaattggagacagtttggtgagttacttacatgtgtggtctatgagttttgaacttatc |
115 |
Q |
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| T |
31389709 |
attttcaagggcaaagagtacttcagtgataaccaaatgcgaaatcggagacagtttggtgagttacttacatgtgtggtctatgtgttttgaacttatc |
31389808 |
T |
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| Q |
116 |
tactgacataagcactcgcgagtcgtgacaatttctgcgaaagcttatgtaaacaacttatgacatgtccattagcttatgaaaacagtttgacttgatg |
215 |
Q |
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| T |
31389809 |
tactgacataagcactcgcgagtcgtgacaatttctgtgagagcttgtgtaaacaacttatgacatgtccattagcttataaaaacagtttgactatatg |
31389908 |
T |
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| Q |
216 |
ttgatgtttgtatattgtaggaagaattctt |
246 |
Q |
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| T |
31389909 |
ttgatgtttgtatattgtaggaagaattctt |
31389939 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 187
Target Start/End: Original strand, 31875573 - 31875606
Alignment:
| Q |
154 |
gaaagcttatgtaaacaacttatgacatgtccat |
187 |
Q |
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| T |
31875573 |
gaaagcttatggaaacaacttatgacatgtccat |
31875606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0311 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0311
Description:
Target: scaffold0311; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 187
Target Start/End: Original strand, 10596 - 10628
Alignment:
| Q |
155 |
aaagcttatgtaaacaacttatgacatgtccat |
187 |
Q |
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| T |
10596 |
aaagcttatgtaaacaactaatgacatgtccat |
10628 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 193
Target Start/End: Complemental strand, 32917286 - 32917250
Alignment:
| Q |
157 |
agcttatgtaaacaacttatgacatgtccattagctt |
193 |
Q |
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| T |
32917286 |
agcttatggaaacaacttatgacatgtccataagctt |
32917250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 193
Target Start/End: Complemental strand, 2996662 - 2996626
Alignment:
| Q |
157 |
agcttatgtaaacaacttatgacatgtccattagctt |
193 |
Q |
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| T |
2996662 |
agcttatgaaaacaacttatgacatgtccataagctt |
2996626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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